Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h12
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 43 4e-05
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 42 6e-05
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 38 0.002
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 31 0.14
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 28 1.3
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 4.0
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 4.0
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 5.3
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 26 5.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 5.3
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 9.3
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +2
Query: 362 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 541
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAMFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 542 TQR 550
+ R
Sbjct: 178 SNR 180
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 42.3 bits (95), Expect = 6e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +2
Query: 362 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 541
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAIFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 542 TQR 550
+ R
Sbjct: 178 SNR 180
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 299 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 472
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 473 QVPIFQPRSDGNNNLLCAVLIAATQR 550
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 299 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 472
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 473 QVPIFQPRSDGNNNLLCAVLIAATQR 550
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 101 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLAGTDK 214
K E G+ + ++ + KL +L + A+W NL+ TDK
Sbjct: 643 KYELGIAISGYALDKNVGKLVELINKAFWNTNLSNTDK 680
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 583 FCSKEHCYFWYALSG 539
FC KE+CYF +A +G
Sbjct: 511 FCPKENCYFMFACAG 525
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 259 FNIR-VFSIR*C*VILLICTSEVVLPVCIVM*LR*FPNNTLYI--FLRYQYAFFVF 101
F IR VF++ VI LI T +LP C+++ L +P L F + FF+F
Sbjct: 305 FKIREVFTLHQLQVISLIFTLISILPSCVILFL--YPRKRLLALGFASASWGFFLF 358
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 242 KDTDVKILYQIYEYDELKDSS 304
K D +ILY+ Y+Y E+K+ S
Sbjct: 10 KGKDAEILYEEYKYHEIKEMS 30
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.8 bits (54), Expect = 5.3
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +2
Query: 11 QDSPCDNTSGKMAEIKRVLVLYTGGTFGMLKNEKGVLVPQKDIESVIR-KLPQLHDDAYW 187
Q+ N ++ ++K +L G L G+ P K+++S +L +L+ + W
Sbjct: 146 QELTPQNALNRITKLKSNGLLVKPG-MDQLSLINGLEEPPKELQSHQSVELYRLYQTSLW 204
Query: 188 KNNLAGTDK--KDYLALPDGKDTDVKILYQIYEYDELKDSS 304
KNNLA D +++ L + V+ + I DE +D+S
Sbjct: 205 KNNLADFDDLLLNFILLLQKQPDCVRNIKHIL-IDEFQDTS 244
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 230 LPDGKDTDVKILYQIYEYDELKDSSD 307
+P D+ + YEY+E KDSSD
Sbjct: 539 IPSLDKLDITTGLKTYEYEETKDSSD 564
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 113 GVLVPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILYQIYEYDEL 292
G+ Q ++ L LH D + NN K++++ L D + +I+ Y YD +
Sbjct: 444 GMFSSQDQCYILVFSLMMLHTDVFNSNNKHKMTKQEFINLCDIDELAPEIME--YYYDNI 501
Query: 293 KDSSDFTIDD 322
+ +DD
Sbjct: 502 TFTPFVNLDD 511
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 104 FSAYRMYLQCTALELVLFRPFCLTCCHTDCPE 9
F + L+C L RPF C HT C E
Sbjct: 76 FQKIKKTLECPICTEALQRPFTTHCGHTYCYE 107
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 552 YQK*QCSLEQNSLGELE*KKVSNTRIY 632
Y +CSL+ SL ++ K+VSN ++Y
Sbjct: 449 YVSPECSLQGESLEWIKGKQVSNCKLY 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,493
Number of Sequences: 5004
Number of extensions: 62670
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -