Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h12
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    29   4.1  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    28   5.5  
11_06_0059 + 19691588-19691697,19692281-19692348,19692400-196925...    28   7.2  
03_06_0196 + 32260357-32260785                                         28   7.2  
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    27   9.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    27   9.6  

>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 401 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 544
           T  GG++L+F + T+ +   + GA   +F P R DG    +  +L  +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
 Frame = +2

Query: 152 RKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILY-QIYEYDELK----------D 298
           R++ +  DD YW+    GT     L LP         L+ +I++Y+E K           
Sbjct: 302 RRIIRSDDDCYWQWEPCGTVDSASLLLPAADSCVPDCLFPEIFDYEERKLALNNVLSSFP 361

Query: 299 SSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 415
           + D   DD + M   IK    D DG+++   T++    G
Sbjct: 362 TLDLYRDDVVYMMTKIKD--DDPDGWIIAVNTESKRLEG 398


>11_06_0059 +
           19691588-19691697,19692281-19692348,19692400-19692579,
           19693267-19693573,19694079-19694559
          Length = 381

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/80 (21%), Positives = 38/80 (47%)
 Frame = +2

Query: 260 ILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFMLE 439
           ++ Q+   D    SS  +  ++  +A    + +HD+D   + HG  +++  GS++     
Sbjct: 230 VVDQLSPMDSFDFSSTQSSPNYDNVALSPLKLHHDHDESYIGHGAGSSSEKGSMMYESRL 289

Query: 440 TVGKTVVLTGAQVPIFQPRS 499
           TV K  +  G    +F+ ++
Sbjct: 290 TVSKETLDDGPLGEVFKRKN 309


>03_06_0196 + 32260357-32260785
          Length = 142

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 197 LAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARD 343
           L+G+D  D + L DG ++   ++++  E  +  +S+   +D  I  A+D
Sbjct: 7   LSGSDGGDSVELHDGSESSFAVVHENAEISDATESNYDHVDSKIAAAKD 55


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 472 STSEYNSLSDGFQHERQDRTTVRSCVGAVQNH--ESIVIMVKPLNISRHFYPIVYREIRR 299
           S  E  +L+D   +  Q  + + S   ++++H  E +V+++K   +  H  P V   +R 
Sbjct: 673 SCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRL 732

Query: 298 IFEFIVFVNLVQNFNIRVFSI 236
           + +++     +Q+F    FSI
Sbjct: 733 VMQYLEREATLQDFAFSFFSI 753


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 330 KWREILSGFTMITMDSWFCTA-PTQLRTVVRSCLSCWKPSERLLY 461
           KWR +L G  + +  +WFC+  P   R         W    ++ Y
Sbjct: 512 KWRRLLDGTALDSSTAWFCSMNPDSARQKCSIPEESWDLKRKITY 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,000,939
Number of Sequences: 37544
Number of extensions: 389935
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)