Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h12
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.   173   6e-43
BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protei...    33   1.1  
AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.     33   1.1  
BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) ...    30   8.0  
AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing hel...    30   8.0  
AF260270-1|AAF70326.1|  714|Homo sapiens PAD protein.                  30   8.0  

>BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.
          Length = 439

 Score =  173 bits (420), Expect = 6e-43
 Identities = 92/185 (49%), Positives = 120/185 (64%)
 Frame = +2

Query: 56  KRVLVLYTGGTFGMLKNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALP 235
           +R+L +YTGGT GM ++E GVLVP   + +++R LP  HD+ + +   A    +D L LP
Sbjct: 9   RRLLAVYTGGTIGM-RSELGVLVPGTGLAAILRTLPMFHDEEHAR---ARGLSEDTLVLP 64

Query: 236 DGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 415
                  +ILY + E   L DSSD TI +W+ +A+ IKR Y  Y GFVV+HGTDT A+  
Sbjct: 65  PASRNQ-RILYTVLECQPLFDSSDMTIAEWVCLAQTIKRHYEQYHGFVVIHGTDTMAFAA 123

Query: 416 SVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGAKLFRG 595
           S+LSFMLE + KTV+LTGAQVPI    SDG  NLL A+L+A    IPEV +FF  +LFRG
Sbjct: 124 SMLSFMLENLQKTVILTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQLFRG 183

Query: 596 TRVKK 610
            R  K
Sbjct: 184 NRATK 188


>BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protein 1
           protein.
          Length = 1287

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 122 VPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDS 301
           V  K I S ++ L  +H+  Y   +    D +D  ++ DG+DT V  L +   YD  +D+
Sbjct: 141 VTSKQICSAMQTLYHMHNAEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNSYDISRDT 200


>AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.
          Length = 1359

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 122 VPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDS 301
           V  K I S ++ L  +H+  Y   +    D +D  ++ DG+DT V  L +   YD  +D+
Sbjct: 213 VTSKQICSAMQTLYHMHNAEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNSYDISRDT 272


>BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) box
           polypeptide 40 protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 380 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 559
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 158 ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 217

Query: 560 VTVFFG 577
           ++ FFG
Sbjct: 218 LSAFFG 223


>AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing
           helicase-like protein protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 380 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 559
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 158 ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 217

Query: 560 VTVFFG 577
           ++ FFG
Sbjct: 218 LSAFFG 223


>AF260270-1|AAF70326.1|  714|Homo sapiens PAD protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 380 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 559
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 59  ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 118

Query: 560 VTVFFG 577
           ++ FFG
Sbjct: 119 LSAFFG 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,321,449
Number of Sequences: 237096
Number of extensions: 2119273
Number of successful extensions: 4348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4346
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)