Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h12
         (641 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119242-1|AAM51102.1|  631|Drosophila melanogaster SD20009p pro...   192   5e-49
AE014298-587|AAF45911.1|  631|Drosophila melanogaster CG6428-PA ...   192   5e-49
AY094641-1|AAM10994.1|  605|Drosophila melanogaster AT09114p pro...   166   3e-41
AE014297-1049|AAF54458.1|  605|Drosophila melanogaster CG8526-PA...   166   3e-41
AY118699-1|AAM50559.1|  309|Drosophila melanogaster AT19571p pro...    32   0.57 
AE014298-2117|AAF48435.2|  309|Drosophila melanogaster CG15031-P...    32   0.57 
BT015985-1|AAV36870.1|  738|Drosophila melanogaster RE58108p pro...    29   7.1  
AE013599-3293|AAF46774.1|  414|Drosophila melanogaster CG13487-P...    29   7.1  

>AY119242-1|AAM51102.1|  631|Drosophila melanogaster SD20009p
           protein.
          Length = 631

 Score =  192 bits (467), Expect = 5e-49
 Identities = 92/190 (48%), Positives = 126/190 (66%), Gaps = 1/190 (0%)
 Frame = +2

Query: 59  RVLVLYTGGTFGMLKNEKGVLVPQKD-IESVIRKLPQLHDDAYWKNNLAGTDKKDYLALP 235
           RV V+YTGGT GM++NE+ VL P  + +   IRK P +HD+ Y       +     L LP
Sbjct: 51  RVKVIYTGGTIGMVRNERNVLAPIPNALVRSIRKYPNIHDEEYALRRFGASASMAPLVLP 110

Query: 236 DGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 415
             +  D +++YQI EY  L DSS+ T++DW ++A DI++ Y  +DGFVVLHGTDT +Y  
Sbjct: 111 IVQGVDRRVIYQISEYTPLLDSSNMTMNDWARIASDIQQSYEFFDGFVVLHGTDTLSYTA 170

Query: 416 SVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGAKLFRG 595
           S LSFMLE +GKTV++TG+Q+PIF+ R+DG +N   A++IA    IPEV +FFG KL RG
Sbjct: 171 SALSFMLENLGKTVIITGSQIPIFETRTDGKDNFTSALIIAGNYIIPEVCIFFGHKLMRG 230

Query: 596 TRVKKSIEHA 625
            R  K   +A
Sbjct: 231 NRTVKVSSNA 240


>AE014298-587|AAF45911.1|  631|Drosophila melanogaster CG6428-PA
           protein.
          Length = 631

 Score =  192 bits (467), Expect = 5e-49
 Identities = 92/190 (48%), Positives = 126/190 (66%), Gaps = 1/190 (0%)
 Frame = +2

Query: 59  RVLVLYTGGTFGMLKNEKGVLVPQKD-IESVIRKLPQLHDDAYWKNNLAGTDKKDYLALP 235
           RV V+YTGGT GM++NE+ VL P  + +   IRK P +HD+ Y       +     L LP
Sbjct: 51  RVKVIYTGGTIGMVRNERNVLAPIPNALVRSIRKYPNIHDEEYALRRFGASASMAPLVLP 110

Query: 236 DGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 415
             +  D +++YQI EY  L DSS+ T++DW ++A DI++ Y  +DGFVVLHGTDT +Y  
Sbjct: 111 IVQGVDRRVIYQISEYTPLLDSSNMTMNDWARIASDIQQSYEFFDGFVVLHGTDTLSYTA 170

Query: 416 SVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGAKLFRG 595
           S LSFMLE +GKTV++TG+Q+PIF+ R+DG +N   A++IA    IPEV +FFG KL RG
Sbjct: 171 SALSFMLENLGKTVIITGSQIPIFETRTDGKDNFTSALIIAGNYIIPEVCIFFGHKLMRG 230

Query: 596 TRVKKSIEHA 625
            R  K   +A
Sbjct: 231 NRTVKVSSNA 240


>AY094641-1|AAM10994.1|  605|Drosophila melanogaster AT09114p
           protein.
          Length = 605

 Score =  166 bits (403), Expect = 3e-41
 Identities = 86/192 (44%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
 Frame = +2

Query: 38  GKMAEIKRVLVLYTGGTFGMLKNEKGVL-VPQKDIESVIRKLPQLHDDAYWKNNLAGTDK 214
           G + +  RV V+Y GGT GM++NE GVL    K +   +++ P  HD  Y   +  G   
Sbjct: 7   GCLKKEARVHVIYVGGTIGMIRNESGVLHTAPKVLARQLQEFPSCHDRNYTSKDNDGP-- 64

Query: 215 KDYLALPDGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGT 394
              + LP       ++LY + E+  L DSS     DW ++A ++ + Y  YDGFV+LHGT
Sbjct: 65  --MMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWKRIANEVGKTYKSYDGFVILHGT 122

Query: 395 DTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFF 574
           DT AY  S L+FMLE++ K VV TGAQ+PIF+ RSDG  N L A+LIA    IPEV VFF
Sbjct: 123 DTLAYSASALAFMLESLNKPVVFTGAQIPIFEARSDGRENFLGALLIAGNYSIPEVLVFF 182

Query: 575 GAKLFRGTRVKK 610
           G K+ RG R  K
Sbjct: 183 GNKILRGCRSTK 194


>AE014297-1049|AAF54458.1|  605|Drosophila melanogaster CG8526-PA
           protein.
          Length = 605

 Score =  166 bits (403), Expect = 3e-41
 Identities = 86/192 (44%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
 Frame = +2

Query: 38  GKMAEIKRVLVLYTGGTFGMLKNEKGVL-VPQKDIESVIRKLPQLHDDAYWKNNLAGTDK 214
           G + +  RV V+Y GGT GM++NE GVL    K +   +++ P  HD  Y   +  G   
Sbjct: 7   GCLKKEARVHVIYVGGTIGMIRNESGVLHTAPKVLARQLQEFPSCHDRNYTSKDNDGP-- 64

Query: 215 KDYLALPDGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGT 394
              + LP       ++LY + E+  L DSS     DW ++A ++ + Y  YDGFV+LHGT
Sbjct: 65  --MMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWKRIANEVGKTYKSYDGFVILHGT 122

Query: 395 DTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFF 574
           DT AY  S L+FMLE++ K VV TGAQ+PIF+ RSDG  N L A+LIA    IPEV VFF
Sbjct: 123 DTLAYSASALAFMLESLNKPVVFTGAQIPIFEARSDGRENFLGALLIAGNYSIPEVLVFF 182

Query: 575 GAKLFRGTRVKK 610
           G K+ RG R  K
Sbjct: 183 GNKILRGCRSTK 194


>AY118699-1|AAM50559.1|  309|Drosophila melanogaster AT19571p
           protein.
          Length = 309

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 257 KILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFML 436
           K+   +YEYD  +++  +T+D+W  M    K+  + +   +   GT     GGS  +   
Sbjct: 150 KVSSFVYEYDSSEETEQYTLDEWRAMQAQKKQVLNKF--IMSDFGTKKEVTGGSEETVRA 207

Query: 437 ETVGKT 454
           E  G T
Sbjct: 208 EGSGDT 213


>AE014298-2117|AAF48435.2|  309|Drosophila melanogaster CG15031-PA
           protein.
          Length = 309

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 257 KILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFML 436
           K+   +YEYD  +++  +T+D+W  M    K+  + +   +   GT     GGS  +   
Sbjct: 150 KVSSFVYEYDSSEETEQYTLDEWRAMQAQKKQVLNKF--IMSDFGTKKEVTGGSEETVRA 207

Query: 437 ETVGKT 454
           E  G T
Sbjct: 208 EGSGDT 213


>BT015985-1|AAV36870.1|  738|Drosophila melanogaster RE58108p
           protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 276 TNTMNSKILRISR*TIG*K-WRE-ILSGFTMITMDSWFCTAPTQLRTVVRSCLSC 434
           ++  NS ILR+ R  IG   WR+ + +   ++TM     T P  + TVV + ++C
Sbjct: 485 SSNRNSGILRMDRQQIGCDIWRDKVRTRRKLLTMSEGEITCPAHIVTVVCAVITC 539


>AE013599-3293|AAF46774.1|  414|Drosophila melanogaster CG13487-PA
           protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 276 TNTMNSKILRISR*TIG*K-WRE-ILSGFTMITMDSWFCTAPTQLRTVVRSCLSC 434
           ++  NS ILR+ R  IG   WR+ + +   ++TM     T P  + TVV + ++C
Sbjct: 161 SSNRNSGILRMDRQQIGCDIWRDKVRTRRKLLTMSEGEITCPAHIVTVVCAVITC 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,141,860
Number of Sequences: 53049
Number of extensions: 655758
Number of successful extensions: 2136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)