Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h09
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    29   0.32 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    28   0.98 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   0.98 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   2.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   3.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.9  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.1  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   9.1  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 128 FLNYKVIASFQNVWRFHLFEECFDRVEHSLRGCSKHLDFSHS-LWASV 268
           F N +VI +    WR  ++E    + E SL+   +  D  H+ LW  V
Sbjct: 383 FFNARVIIALYVEWRLRVYETMIIKGEESLKNLQRARDGPHNKLWLGV 430


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 232 LATTT*RMFNAIKAFFEQVKPPHILKASNNFVIKKILILLGL 107
           L T    +F AIK  F   K  +++KA N  +   ++ LLG+
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQLIQHGLIRLLGI 265


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 409 FCFWYSFRLLVLVWQLTPSSKRCWL 483
           FC+W +  LLV +W + P S+R ++
Sbjct: 167 FCYWGNILLLVYIW-IFPESRRLFI 190


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +3

Query: 87  IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNILYVVVASI------LISV 248
           I L K   P K  +  IT+ L    MC  F    + +IA+  + +   ++      LIS+
Sbjct: 313 ILLPKLPLPEKNKLHFITQSLQTGVMCS-FLAFIDTVIAVKAISLQTNNLIRSNRELISL 371

Query: 249 TVYGQASSLVTNLPIVGGIL 308
                 SSL   LPI GG L
Sbjct: 372 GAANIGSSLFCGLPICGGYL 391


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 LAHCRWYTSMWSISHLNLHIGACRSSQASPS 376
           L HC   +++   + +N H+ +C +S +SPS
Sbjct: 156 LVHCPACSNLVPHNQINQHLDSCLNSPSSPS 186


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 248  HSLWASVIPGYQLAHCRWYTSMWSISHLNLHI 343
            +++W  VI G  L   RW    WS S L +++
Sbjct: 2205 NNVWFPVIFGLGLICPRWCLEFWSSSGLGINL 2236


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 LITKLLLAFKMCGGFTCSKN 191
           +IT LLL F +  GF CS N
Sbjct: 271 VITLLLLLFTIAIGFACSHN 290


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 215  LRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSISHLNLHI 343
            L G    +  +HS W   + G  L   RW    W+ S++ L++
Sbjct: 2249 LLGVLAWISRTHS-WIICVFGVGLGAPRWLQQFWATSNIGLYL 2290


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 434 NRKLYQKQKE*YYHVKEQHNLVML 363
           N +  +KQ+   YH+ E  NLV L
Sbjct: 84  NVRTVRKQRSSLYHISENRNLVRL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,618
Number of Sequences: 5004
Number of extensions: 43983
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)