Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h09
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 29 2.3
01_01_0205 + 1764034-1767601,1767934-1767944 29 3.0
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 28 4.0
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 28 5.3
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 27 7.0
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 27 7.0
11_06_0110 + 20212221-20214011,20214072-20214368 27 9.2
01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416 27 9.2
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 329 LNLHIGACRSSQASPSYAVLLHGNTIPFVFGTVFDCLCLFGS*LRAARDVGSTGDGIKV 505
+ +I C Q SY +H T+ F+FGTV + +F + + GS IK+
Sbjct: 868 MTANIPVCMLDQCRKSYLRSIHWKTLIFLFGTVSVFVLVFARGVPTSLSGGSQDCYIKI 926
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 227 SKHLDFSHSLWASVIPGYQLAHCR-WYTSM 313
++ LD+SH+ ++S++P + L + WY SM
Sbjct: 798 AEFLDYSHNAFSSILPNFTLYLSKTWYLSM 827
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 185 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 322
E +D E + +F + LW ++ Y++ H + MWSI
Sbjct: 673 EGLYDEYEDIMNNSVTEEEFEY-LWNEMVDSYEVQHINFLKHMWSI 717
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 173 FHLFEECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 322
F E +D E + +F + LW +I +++ H + MWSI
Sbjct: 428 FRSKEGLYDEYEDIINNSVTEEEFEY-LWQEMIDSFEVQHINFLKHMWSI 476
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 185 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 322
E +D E + +F + LW +I +++ H + MWSI
Sbjct: 456 EGLYDEYEDIINNSVTEEEFEY-LWQEMIDSFEVQHINFLKHMWSI 500
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 185 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 322
E +D E + +F + LW ++ Y++ H + MWSI
Sbjct: 607 EGLYDEYEDIMNNSVTEEEFEY-LWNEMVDSYEVQHIYFLKHMWSI 651
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 230 KHLDFSHSLWASVIPGYQLAHCRWYTSMWSISHLNLH 340
K LDFS L +S+ P ++ W + ++ +LNL+
Sbjct: 171 KFLDFSGMLPSSMAPFLYISDASWLAHLSNLQYLNLN 207
>01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416
Length = 347
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 350 CRSSQASPSYAVLLHGNTIPF-VFGTVFDCLCLFGS*LRAA 469
CRSS+ P ++VLL N +P F T+F L F L+AA
Sbjct: 63 CRSSRPPPEFSVLL--NDLPTNDFNTIFFSLPEFTDRLKAA 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,405,006
Number of Sequences: 37544
Number of extensions: 263959
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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