Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h09
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    30   0.88 
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    29   2.0  
U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead transc...    29   2.7  
AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 299 WYTSMWSISHLNLHIGACRSSQASPSYAVLL 391
           W+ +  + S LN H+   R+S  S SYAVL+
Sbjct: 80  WFQTEGNSSQLNFHMLIARTSSVSSSYAVLM 110


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 45  LFTHPINS*EYYV*IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNI 212
           L T P ++  YY     L FD P   S   I+ L   ++    +T S+ ++I LN+
Sbjct: 483 LMTFPADTKNYYSLRSTLVFDGPGLSSGCYISNLYQLYQTTNQWTSSQKSIIVLNL 538


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 197 DRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCR 298
           D  E    GCS  L+ +HS +  ++ G +  HCR
Sbjct: 110 DLYEKITSGCSFSLEEAHSYFKQLVNGLKFLHCR 143


>U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 7, isoform c protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 125 YFLNYKVIASFQNVWRFHL-FEECFDRVEHSLRGCSKHLDFS 247
           Y  N K +  FQN  R +L   +CF RVE +++G    +D S
Sbjct: 7   YNNNMKQLIFFQNAVRHNLSLHKCFQRVEQNVKGAVWTVDDS 48


>AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical
           protein Y53C10A.3 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 179 LFEECFDRVEHSLRGCSKHLDFSH 250
           LF   F ++ H   GC  HL+FSH
Sbjct: 92  LFMCGFGKITHVSHGCHVHLEFSH 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,305
Number of Sequences: 27780
Number of extensions: 248600
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)