Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h09
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.8  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 131 LNYKVIASFQNVWRFHLFEECFDRVEHSLRG 223
           +NY +   F ++ RF  F    D+V  S RG
Sbjct: 19  INYFIFLYFNSLVRFRRFTIELDKVLESPRG 49


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 299 WYTSMWSISHLN 334
           W T MW+ SHL+
Sbjct: 94  WMTLMWTDSHLS 105


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  SLSLYYFVHTPYKLLRVLCVNQIVKI 103
           ++SL++   TPY ++    +  +VKI
Sbjct: 283 TISLWFMAWTPYLVINFSGIFNLVKI 308


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  SLSLYYFVHTPYKLLRVLCVNQIVKI 103
           ++SL++   TPY ++    +  +VKI
Sbjct: 33  TISLWFMAWTPYLVINFSGIFNLVKI 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,404
Number of Sequences: 438
Number of extensions: 2902
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)