Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h07
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0885 + 7353926-7354770,7354845-7355487                           30   1.5  
02_03_0367 + 18220099-18220905                                         29   2.6  
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    27   7.8  

>07_01_0885 + 7353926-7354770,7354845-7355487
          Length = 495

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 364 WIKYWADKRRSVMIKKKQIEEGKLRGRITIME 459
           W+ YW +K+R++ ++ +++E  +L  R+TI E
Sbjct: 465 WVTYWPNKKRTLHVETRRVEFRELL-RLTIRE 495


>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 487 KSLSPK--KRGKVKEEPCNGGDGD 552
           KSL PK  K GK+   P  GGDGD
Sbjct: 2   KSLCPKPGKGGKIHPSPLGGGDGD 25


>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +1

Query: 292 FKKIWMELAKTANSVGGAVKSSQGWIKYWADKRRSVMIKKKQIEEGKLRGRITIMEQKI- 468
           F+ + +E  + A +V     S +GW ++ A        +++++EE ++     I E+++ 
Sbjct: 16  FQSVELEKDRAALAVRRCGWSREGWTRWTASDEEEKEEEEEEVEEEEVEEEEEIEEEEVE 75

Query: 469 LDLCNEKSLSPKKRGKVKEEPCNGGD 546
            ++  E+    ++  +V+EE    G+
Sbjct: 76  EEIEEEEEEIEEEEEEVREEVQEAGE 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,368
Number of Sequences: 37544
Number of extensions: 262594
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)