Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h07
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    28   4.0  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41007-5|AAK84503.1|  224|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 376 WADKRRSVMIKKKQIEEGKLRGRITIMEQKILD--LCNEKSLSPKK 507
           WAD+  + + ++K IE+   +G+I    +K++D  + N + LS +K
Sbjct: 423 WADQGNTTLKREKSIEKSTRQGKIDKSIEKLIDKSIDNTEKLSSQK 468


>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 189 NTDTLRVFYLGIGHFRVLRDQGS-TELLPHLLQTKLLFSSCRMKLIEY*MY*VHF----M 25
           N   + VFY GI  +  LR+QG+        LQ +L +S     +I   ++ +HF    M
Sbjct: 213 NISVITVFYFGIKCYSSLREQGALVSQNTQKLQNQLFYSLVIQTVIP--LFLMHFPVAAM 270

Query: 24  YAFAF 10
           Y F F
Sbjct: 271 YCFTF 275


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 163 PRNRTFSGSEGSRQY*VITTFAANKVIIL*LPNEINRILDVLSTFYVR 20
           P NRT       R Y V  T AAN  +++ LP  +  +L+++  +YV+
Sbjct: 191 PNNRTNISPPALRTY-VAATRAANAALVVFLPMILLVVLNMMLLYYVK 237


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 22/98 (22%), Positives = 42/98 (42%)
 Frame = +1

Query: 226 EFMQKHPDLAHKKLRVGMGRGKFKKIWMELAKTANSVGGAVKSSQGWIKYWADKRRSVMI 405
           E       +  KK+ + + R +  K   +L +     G    + +  +    DKR S+ I
Sbjct: 360 EIKMSESQMRRKKVEIMLIRKEIAKAQKQLREALGKFGHEELTKK--LAEAEDKRESLNI 417

Query: 406 KKKQIEEGKLRGRITIMEQKILDLCNEKSLSPKKRGKV 519
           + ++IE  +L+      E+   +L NE+      RGK+
Sbjct: 418 EIEEIEHVQLKALRKKYEKLTKELRNEEEEKFNTRGKI 455


>U41007-5|AAK84503.1|  224|Caenorhabditis elegans Hypothetical
           protein C33H5.19 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 430 KLRGRITIMEQKILDLCNEKSLSPKKRGKVKE 525
           ++  R+TI+EQ++L    +  L+ K+ GKV+E
Sbjct: 54  EIASRLTIIEQQMLKSALDDCLTKKEDGKVEE 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,779
Number of Sequences: 27780
Number of extensions: 231390
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)