Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h07
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 236 CINSTTARTCANVGLETPTLSEFSTSESDIF 144
           C++++++R  + +G  TP  S F   E  I+
Sbjct: 645 CLDASSSRRGSKIGSPTPAESTFIPEERRIY 675


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 524 SFTLPLFFGDNDFSLHKSNIFCSI 453
           S +LP  FG   +     N+ CS+
Sbjct: 28  SLSLPPLFGWGSYGPEAGNVSCSV 51


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 179 LSEFSTSESDIFGF*GIKAVLSYYH 105
           L  +STS  D   F   K +L YYH
Sbjct: 405 LQMWSTSLRDPVFFSIYKTILDYYH 429


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 179 LSEFSTSESDIFGF*GIKAVLSYYH 105
           L  +STS  D   F   K +L YYH
Sbjct: 405 LQMWSTSLRDPVFFSIYKTILDYYH 429


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 179 LSEFSTSESDIFGF*GIKAVLSYYH 105
           L  +STS  D   F   K +L YYH
Sbjct: 31  LQMWSTSLRDPVFFSIYKTILDYYH 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,044
Number of Sequences: 438
Number of extensions: 2809
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)