Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h06
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.7  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   3.5  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   3.5  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    26   3.5  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   4.7  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 40  IRKYLPRMGIKKNNNLIMECYRKVFDYLSCIVNY-KLVSHSIFELRALFNFDTLAYTMGS 216
           + KYL + G+ +N     E    +  +    V Y K + + +    A+F++D + YTM  
Sbjct: 115 VEKYLQKKGVYRNQLSKDELLSSIHSWQ---VKYQKSIINQLKSFEAIFDWDNIFYTMDQ 171

Query: 217 AHTE 228
             +E
Sbjct: 172 NRSE 175


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 212 DLHTQKKLNTFQIHEFYSCIQDLREMLRSINAG 310
           D+H + KL+   + +  S I DLRE +  +NAG
Sbjct: 594 DIH-KDKLDQQAVEDLRSKITDLRETVAKVNAG 625


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 496 TILSNSFHVTFAFKNLTLRSFHRLWTQQSRHSERHK 389
           ++LS  F + +   NLT     R W+Q  R +   K
Sbjct: 35  SVLSKLFFIKYLMLNLTKVGLRRFWSQSPRRNAPKK 70


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 538 RHGSTKSLQIH*LYTILSNSFHVTFA 461
           RH   K L    LYT LSN+ HV+ A
Sbjct: 122 RHSKLKPLCTEELYTYLSNNSHVSSA 147


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 61  MGIKKNNNLIMECYRKVFDYLSCIVNYKLVSHSIFELRALFNFDT 195
           MG++ +N + +EC R+    L    N ++V H +    + +  DT
Sbjct: 438 MGVESDNLMPVECQRETARCLEKAGNKQVVYHELDANESFYGHDT 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,745
Number of Sequences: 5004
Number of extensions: 53799
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)