Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h06
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 29 3.6
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 4.8
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 28 6.3
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 28 6.3
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 27 8.4
03_06_0290 + 32878040-32880193,32881607-32881720 27 8.4
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807... 27 8.4
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 504 NCTQYYQIRFTSHSHSKI-SHFGHFIDYGRNRAATLNAISLKCPNIRHRTEF-VNVKNLI 331
N Y+ ++ H S FGH YG R+A + ++L ++ R E NV +
Sbjct: 646 NVWAYFSVKSGGGIHEFADSQFGHVFAYGTTRSAAITTMALALKEVQIRGEIHSNVDYTV 705
Query: 330 ALL 322
LL
Sbjct: 706 DLL 708
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 518 STNTLTVHNTIKFV--SRHIRIQKSHTSVI 435
S+N+ HNT+KF S+HI I+ S +I
Sbjct: 396 SSNSEETHNTLKFAHRSKHIEIKASQNKII 425
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -3
Query: 568 HFSNVILNFFRHGSTKSLQIH*LYTILSNSFH----VTFAFKNLTLRS 437
HF+N+ +N + + ++I +LSN FH T+A N T R+
Sbjct: 278 HFANLAINHYNNIEENIVKIELCTVLLSNCFHEICGSTYAHVNFTARA 325
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 275 LGCKNKIHEFGMYLVSSVCADPIVYAKVSK 186
L K+ ++ FG+ L+ ++CA P+V ++ K
Sbjct: 776 LTAKSDVYSFGVVLLEALCARPVVDPRLPK 805
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 212 DLHTQKKLNTFQIHEFYSCIQDLREMLRSI 301
DLHT++K+ ++H + + D +LR I
Sbjct: 126 DLHTRQKVAIKKVHNIFEHVSDAARILREI 155
>03_06_0290 + 32878040-32880193,32881607-32881720
Length = 755
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 82 NLIME-CYRKVFDYLSCIVNYKLVSHSIFELRALFN 186
+++ME C + Y +CI+ Y L +IFE LFN
Sbjct: 574 HMLMEGCLLNEYTY-NCILRYFLTKETIFEAAILFN 608
>02_04_0084 -
19579104-19579230,19580323-19580417,19580578-19580719,
19581155-19581189,19581493-19581632,19581678-19581770,
19584007-19584244
Length = 289
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 571 LHFSNVIL--NFFRHGSTKSLQIH*LYTILSNSFHVTFAF 458
LHF+ +L N F H T +H + I S+ HV F +
Sbjct: 165 LHFTIPVLAANAFHHSWTVKAMLHIISLICSSEIHVLFVY 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,623
Number of Sequences: 37544
Number of extensions: 286445
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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