Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h06
         (588 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein.         30   7.0  
U89344-1|AAB58382.1| 2483|Homo sapiens acetyl-CoA carboxylase pr...    29   9.2  

>BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein.
          Length = 1884

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 268 HPRPKRDAT*YKCWLK*TKQCYQIFNVHK 354
           HP P+  A  Y C L+ TK+C  + NV K
Sbjct: 283 HPLPRVKAETYHCCLEITKECLGVHNVTK 311


>U89344-1|AAB58382.1| 2483|Homo sapiens acetyl-CoA carboxylase
           protein.
          Length = 2483

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 504 NCTQYYQIRFTSHSHS-KISHFGHFIDYGRNRAATLNAISLKCPNIRHRTEF-VNVKNLI 331
           N   Y+ +  T   H   IS FGH   +G NR   ++ + +    +  R +F   V+ LI
Sbjct: 679 NVWGYFTVAATGGLHEFAISQFGHCFSWGENRKEAISNMVVALKELSLRGDFRTTVEYLI 738

Query: 330 ALL 322
            LL
Sbjct: 739 NLL 741


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,771,982
Number of Sequences: 237096
Number of extensions: 1729484
Number of successful extensions: 6988
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6988
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)