Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h06
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96048-3|CAB09418.1|  733|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    29   3.2  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    29   3.2  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    28   5.7  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...    27   9.9  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    27   9.9  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    27   9.9  

>Z96048-3|CAB09418.1|  733|Caenorhabditis elegans Hypothetical
           protein F57A10.3 protein.
          Length = 733

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 61  MGIKKNNNLIMECYRKVFDYLSCIV-NYKL-VSHSIFELRALFNFDTLAY 204
           M  +KN+  ++  YRK++     I   YK  +S S+ +L++ F+   L++
Sbjct: 24  MNFQKNSTFLIRFYRKIYHIFDLICGKYKFQISFSLIQLKSSFHMSLLSH 73


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 537 VTALQNLYKYINCT-QYYQIRFTSHSHSKISHFGHF 433
           +T L+ L  + NC+ ++ Q RF + SH ++S+F  F
Sbjct: 159 LTQLKKLATFSNCSKEWAQTRFKTISHGEMSYFWEF 194


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 537 VTALQNLYKYINCT-QYYQIRFTSHSHSKISHFGHF 433
           +T L+ L  + NC+ ++ Q RF + SH ++S+F  F
Sbjct: 144 LTQLKKLATFSNCSKEWAQTRFKTISHGEMSYFWEF 179


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +2

Query: 170 CAPFSISILWRIQ---WDLHTQK--KLNTFQIHEFY-SCIQD 277
           C  F+   +W I    W L  QK  KLN  + HEFY  CI D
Sbjct: 144 CVVFAFG-MWAIPMIIWQLPDQKFAKLNVIKTHEFYPDCIWD 184



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 323 FVYFSQHLYYVASLLGLGCKNKIHEFGMYLVSSV 222
           F+++  + YY+  LLG+  + KI      LV  V
Sbjct: 300 FLFYDPYQYYLMELLGIKLRQKISNASTILVEKV 333


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 575 KTTFFKCNLKLFSSRLYKISTNTLTVHNTIKFVSRHIRIQKSHTS 441
           +TT  +      +S  Y +ST+ L   + I++++ H++  + H S
Sbjct: 387 RTTTIRNTASNETSAYYPLSTDALRAIDAIEYITEHLKRDEQHKS 431


>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 471 SHSHSKISHFGHFIDYGRNRAA 406
           S  H  + HFGH  DY  N A+
Sbjct: 168 SLKHRAVVHFGHVFDYSTNSAS 189


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 575 KTTFFKCNLKLFSSRLYKISTNTLTVHNTIKFVSRHIRIQKSHTS 441
           +TT  +      +S  Y +ST+ L   + I++++ H++  + H S
Sbjct: 387 RTTTIRNTASNETSAYYPLSTDALRAIDAIEYITEHLKRDEQHKS 431


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 575 KTTFFKCNLKLFSSRLYKISTNTLTVHNTIKFVSRHIRIQKSHTS 441
           +TT  +      +S  Y +ST+ L   + I++++ H++  + H S
Sbjct: 387 RTTTIRNTASNETSAYYPLSTDALRAIDAIEYITEHLKRDEQHKS 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,446
Number of Sequences: 27780
Number of extensions: 297218
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)