Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h06
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    29   0.026
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 0.026
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 272 GCKNKIHE-FGMYLVSSVCADPIV-YAKVSKLKRARNSKIECETNL*FTMHDR*SKTFR* 99
           G K  I   FG +L++ + A P   Y  ++ ++  +NSK   E +    M       F  
Sbjct: 146 GLKRAIRSIFGAWLIALIFAMPFATYVDINYVEYPQNSKRNSEESAICAMLKENMPEFPL 205

Query: 98  HSIIKLLFFLIPI 60
           + +  +LFFLIP+
Sbjct: 206 YQLSCILFFLIPM 218


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 84  IIIFFNSHTRQIFSNLTRARAITARI 7
           ++IF  +H R+ F++ T  R + A I
Sbjct: 292 VVIFHFAHPREEFNHWTVMRCVQAMI 317


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 554 NLKLFSSRLYKISTNTLTVH 495
           N KL  S LYKI  NT+  H
Sbjct: 678 NPKLARSVLYKIYLNTMESH 697


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 55  PRMGIKKNNNLIMECYRKVFDYLSCIVNYKL 147
           P+  +KK   L+M+   K+ + L  I++ +L
Sbjct: 33  PKPLLKKEYPLVMDTKLKIIEILQFILDVRL 63


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 55  PRMGIKKNNNLIMECYRKVFDYLSCIVNYKL 147
           P+  +KK   L+M+   K+ + L  I++ +L
Sbjct: 1   PKPLLKKEYPLVMDTKLKIIEILQFILDVRL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,232
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)