Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h05
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    84   1e-17
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    27   1.4  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    26   3.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   7.5  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.9  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   9.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   9.9  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   9.9  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
 Frame = +1

Query: 232 VLTHVGLYVLMFLGFVNQLIFKPKAATE----KNREGYAPLYDPFEQFFSRYVYRRVRHC 399
           V T++   VL+ +G V     K     +    K+ +GYAPLY+ F+ F+ R +  R+  C
Sbjct: 94  VATYLTYLVLIIIGHVRDFFGKRFHKDDYKYLKDNDGYAPLYNHFDNFYVRRLQHRINDC 153

Query: 400 FNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYLGFAGGEG 555
           F+RP    PG  + L    STD N TFK TG     +N+ SYNYLGFA   G
Sbjct: 154 FSRPTMGVPGRVIRLMNRYSTDSNSTFKLTGDTSLALNVSSYNYLGFAQSHG 205


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 337 PLYDPFEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFK 483
           P  DP      RYV R VR  +   +C +P         ++ D +W F+
Sbjct: 326 PTLDPENVRIKRYVQRLVRCDYTWHLCKSPFKRSTGNTNDNDDPSWRFR 374


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 77  ILPLINFSSCSYDFLVVFSESP 12
           ++  I +S   YDF+  FSESP
Sbjct: 338 LIQAITYSQSKYDFMKKFSESP 359


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 19  SLKTTKKSYEQDEKLINGKIKDRKNGYMKSTQSNGSTPKMTQVEGGGLP 165
           +LK T  +  +   L+NG+ K +   +  +  +  S+PK+++ +   LP
Sbjct: 25  NLKKTNSTPFRKNYLLNGRTKLKLENFAYNASTEISSPKISEKKHSSLP 73


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 352 FEQFFSRYVYRRVRHCFN 405
           F +FF+R+ + RV+ CF+
Sbjct: 81  FNKFFNRHPFTRVKSCFS 98


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 329 PSLFFSVAALGLNMSWL 279
           P+L+F +AALG++ S+L
Sbjct: 642 PALYFGIAALGVSWSFL 658


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 195 PGLVREVFPTDRRPHAR---WTLRSHVPGLRQPAHIQ 296
           P    E+ PT   P+     WT+ S+VP    P  +Q
Sbjct: 243 PPYPAEIIPTSNVPNREEKDWTVTSNVPNKEPPISVQ 279


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 7   GDGDSLKTTKKSYEQDEKL--INGKIK-DRKNGYMKSTQSNGSTPKMTQVE 150
           GD D  +     +E D+KL   NG+++    +G+     +N S    T +E
Sbjct: 426 GDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTIE 476


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 328 GYAPLYDPFEQFFSRYVYRRVRHCF 402
           G   +Y P++++F+ Y YR V+  F
Sbjct: 320 GLIGIYTPWKKWFNEYKYRSVKIFF 344


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 291 YELVDEAQEHENVKSNVREDG 229
           + L +E  E E ++SNV+E+G
Sbjct: 312 HSLYNELDEQEELESNVKEEG 332


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 352 FEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKE 450
           FE+F    +Y  + HC N  + S P  E ++ +
Sbjct: 358 FERFRICELYAELLHCSNMSLLSDPNGEAMVMQ 390


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 394 HCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGS 522
           +CF   +C A G+      W + DH WT  ++  ++R V++ S
Sbjct: 168 NCFTF-LCRALGSRARWI-WNAEDHVWTEVYSNKQQRWVHVDS 208


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 88  KNGYMKSTQSNGSTPKMTQVEGGGLPKIDWSKYDTF 195
           +N Y+K  Q+ G    +T V     PK+  +KY T+
Sbjct: 419 RNRYLKHLQAYGVDVLLTPVGPSPAPKLGEAKYWTY 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,405
Number of Sequences: 5004
Number of extensions: 45925
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)