Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h05
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 82 3e-16
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 75 4e-14
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 75 5e-14
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 63 1e-10
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 31 0.62
06_03_1175 + 28168007-28170058 29 1.9
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 27 7.6
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 27 7.6
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 82.2 bits (194), Expect = 3e-16
Identities = 51/114 (44%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Frame = +1
Query: 226 TAVLTHVGLYVLMFL-----GFVNQLIFKPKAATEKNREGYAPLYDPFEQFFSRYVYRRV 390
T LT + Y L+F F +LI KA KN +GYAP+ E F+ R +Y R+
Sbjct: 7 TTALTTLFSYGLLFAFGQLRDFFRKLIDWFKA---KNVKGYAPICLGLEDFYVRRLYLRI 63
Query: 391 RHCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYLGFAGGE 552
+ CF RPI SAP A + E S D N T K T RC+NLGSYNYLGFA +
Sbjct: 64 QDCFGRPIASAPDAWFDVVERYSNDSNKTLKRTSNTTRCLNLGSYNYLGFAAAD 117
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/83 (48%), Positives = 47/83 (56%)
Frame = +1
Query: 304 AATEKNREGYAPLYDPFEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFK 483
AA N +GYAP+ E F+ R RRV+ CF RPI S P A + E S D N T
Sbjct: 43 AAAGTNLKGYAPICGGQEDFYYRRFVRRVQDCFWRPIASKPDAWFDVVERYSNDSNKTLH 102
Query: 484 FTGVERRCVNLGSYNYLGFAGGE 552
T RC+NLGSYNYLGFA +
Sbjct: 103 RTTKTSRCLNLGSYNYLGFAAAD 125
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 74.5 bits (175), Expect = 5e-14
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Frame = +1
Query: 283 QLIFKPKAATEK----NREGYAPLYDPFEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKE 450
+L+F AA + N +GYAP+ E F+ R +RRV+ CF RPI S P A + E
Sbjct: 35 RLLFSSAAAADSPAGCNSKGYAPICVGKEDFYIRRFFRRVQDCFGRPIASKPDAWFDVVE 94
Query: 451 WESTDHNWTFKFTGVERRCVNLGSYNYLGFAGGE 552
STD N T T +C+NL S+NYLGFA +
Sbjct: 95 RYSTDSNKTLHCTTKTSKCLNLASFNYLGFAAAD 128
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Frame = +1
Query: 304 AATEKNREGYAPLYDPFEQFFSRYVYRRVRH---------------CFNRPICSAPGAEV 438
A N +GYAP+ E F++R +Y R++ CF RPI SAP A
Sbjct: 35 AGKSSNLKGYAPICLGLEDFYTRRLYLRIQEVGISEPYRLITPAMDCFGRPIASAPDAWF 94
Query: 439 VLKEWESTDHNWTFKFTGVERRCVNLGSYNYLGFAGGE 552
+ E S D N T T +C+NLGSYNYLGFA +
Sbjct: 95 DVVERYSNDSNKTLHRTTKTSKCLNLGSYNYLGFAAAD 132
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 EVHAV*WINAEDDTSGG-RRPAKDRLVQVRHVPGLVREVFPTDRRPHARWTL 254
EV A W AED+ G RR + LV+ R +PG +R+ R W L
Sbjct: 8 EVEAARWAEAEDERKEGLRRRRRYGLVEYRALPGYMRDNEYILRHYRCEWPL 59
>06_03_1175 + 28168007-28170058
Length = 683
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 283 QLIFKPKAATEKNREGYAPLYDPFEQFFSRYVYRRVRHCFNRPI 414
+ I+K + A N+EG A +Y P ++ + + C RPI
Sbjct: 272 EFIYKMRGAYTLNKEGPACVYSPAAGYYKDFDFTPAYSCEKRPI 315
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 401 KQCRTRRYTYREKNCSNGSYSGAYPSLFFSVAALGLNMSWLT 276
+QCR R Y Y C G +S L ++ L NM +T
Sbjct: 97 RQCRRRWYNYLNSECKKGGWSREEDLLLCEISELA-NMRSVT 137
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 10 DGDSLKTTKKSYEQDEKLINGKIKDRKNGYMKSTQSNGSTPKMTQVEGGGLPKIDWSKYD 189
D + K +K E+DEK K ++ + ++ T +T + GLP I SK
Sbjct: 420 DIEKKKEERKQKERDEKEKQEKTEEYRRNCIQCVMGPEGTV-VTFPDKMGLPSIFDSKPI 478
Query: 190 TFPGSFEKCS 219
++P EKC+
Sbjct: 479 SYPPPREKCA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,793
Number of Sequences: 37544
Number of extensions: 352575
Number of successful extensions: 1150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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