Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h05
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    94   7e-20
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    94   7e-20
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z98866-23|CAB11557.2|  399|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z93385-1|CAB07638.1|  312|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    27   6.9  

>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
 Frame = +1

Query: 196 PGSFEKCSLLTAVLTHVGLYVLMFLGFVNQLI----FKPKAATEKNRE--GYAPLYDPFE 357
           P  FEK   LT +  ++    L     + + +    F    ++++N +   + PL+  FE
Sbjct: 66  PNEFEKIDRLTTIKVYIAWLALFVFAHIREYVTRFGFVKDLSSKENAKMKDFVPLFSDFE 125

Query: 358 QFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYLG 537
            F+ R  Y +VR  F RPICS PGA V L +  S D NWT+++ G     +N+GSYNYLG
Sbjct: 126 AFYQRNCYIKVRDVFERPICSVPGATVDLVDRVSHDGNWTYEYPGTRTNVINVGSYNYLG 185

Query: 538 FAGGEG 555
           FA   G
Sbjct: 186 FAQSAG 191


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
 Frame = +1

Query: 196 PGSFEKCSLLTAVLTHVGLYVLMFLGFVNQLI----FKPKAATEKNRE--GYAPLYDPFE 357
           P  FEK   LT +  ++    L     + + +    F    ++++N +   + PL+  FE
Sbjct: 94  PNEFEKIDRLTTIKVYIAWLALFVFAHIREYVTRFGFVKDLSSKENAKMKDFVPLFSDFE 153

Query: 358 QFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYLG 537
            F+ R  Y +VR  F RPICS PGA V L +  S D NWT+++ G     +N+GSYNYLG
Sbjct: 154 AFYQRNCYIKVRDVFERPICSVPGATVDLVDRVSHDGNWTYEYPGTRTNVINVGSYNYLG 213

Query: 538 FAGGEG 555
           FA   G
Sbjct: 214 FAQSAG 219


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 35/77 (45%), Positives = 48/77 (62%)
 Frame = +1

Query: 325 EGYAPLYDPFEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERR 504
           E + PL + F+  ++ ++YR+     NRPI   PGA V LK+  + DH WT K+TG E  
Sbjct: 76  ESFQPLGNSFDATYTDHIYRQSTDVVNRPISGVPGAIVRLKDRYTDDHGWTQKYTGTESE 135

Query: 505 CVNLGSYNYLGFAGGEG 555
            +NLGSYNYLGF+   G
Sbjct: 136 VINLGSYNYLGFSHRSG 152


>Z98866-23|CAB11557.2|  399|Caenorhabditis elegans Hypothetical
           protein Y49E10.24 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 531 VVVRAQVDAAPLHARELESPIVIGAFPLLEDDFGSRRRAYRSV 403
           VVV+  V     +  + E PI+IG+ PL ++    R   Y+ V
Sbjct: 300 VVVKLHVKCRMRNTVKAECPIIIGSKPLADEHVDPRTPTYQEV 342


>Z93385-1|CAB07638.1|  312|Caenorhabditis elegans Hypothetical
           protein M01E5.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 319 NREGYAPLYDPFEQFFSRYV---YRRVRHCFN-RPICSAP 426
           NR+G+ PLY  F+  +   V    R  R CFN    C AP
Sbjct: 194 NRDGFKPLYLQFQDNYDLEVGQLCRTQRDCFNTATFCQAP 233


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 407 DRYARRLEPKSSSRSGKAPITIGLSSSRAWS 499
           DR ++  +PKSSS+ GK   +  +  S+ WS
Sbjct: 73  DRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 130 PKMTQV-EGGGLPKIDWSKYDTFPGSFEKCSLLTAVLTHVGLYVLMFLGFVNQLIFKPKA 306
           P+M Q+ +   LP ID +        +   S++ ++ + +  ++ MF+ F++Q+IF   +
Sbjct: 188 PEMVQIPQDTDLPIIDETLQKEESKKYTIGSVIVSIFSAIFNWLCMFVKFISQMIFGAGS 247

Query: 307 ATEKN 321
              KN
Sbjct: 248 TFYKN 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,221
Number of Sequences: 27780
Number of extensions: 283250
Number of successful extensions: 1035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)