Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h05
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.014
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.22 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 156 RPAKDRLVQVRHVPGLVREVFPTDRRPHARWTLRSHVPGLRQ 281
           +P KDR++ +  +  ++ +V PTD+ P   W    +VP L Q
Sbjct: 566 QPDKDRVLVISEIQMVIVDVIPTDKNPVQLW----YVPSLDQ 603


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 155 PPSTCVIFGVDPLDCVDFM*PFLRSFILPLINFSSCSYD 39
           PP+TC++F    + CV    P ++       +FSS  YD
Sbjct: 145 PPTTCLVFSSGSVSCV----PSVKHVAKCATDFSSWPYD 179


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/41 (19%), Positives = 21/41 (51%)
 Frame = +1

Query: 181 KYDTFPGSFEKCSLLTAVLTHVGLYVLMFLGFVNQLIFKPK 303
           K++++P   + CS++   L+H    ++      + L+  P+
Sbjct: 135 KFESYPHDTQICSMMIESLSHTTQDLVFIWNMTDPLVVNPE 175


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 143 CVIFGVDPLDCVD 105
           C++    P+DCVD
Sbjct: 11  CLLLAASPIDCVD 23


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +1

Query: 385 RVRHCFNRPICSAPGAEVVLKEWES 459
           +V   +   +C  PG EV+ +++++
Sbjct: 273 KVHPLYGHGVCKWPGCEVICEDYQA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,667
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)