Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5g24
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0161 - 18757122-18757331,18757931-18758488                       31   0.55 
11_01_0799 + 7035380-7036148,7036587-7037080                           31   0.96 
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219           30   1.7  
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154...    30   1.7  
01_01_0145 + 1327172-1327362,1327491-1328169                           29   2.2  
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    29   3.9  
11_01_0193 - 1534051-1534092,1536343-1537065                           27   8.9  
06_01_0310 - 2240745-2242130                                           27   8.9  
05_03_0066 + 7980038-7981468                                           27   8.9  

>01_05_0161 - 18757122-18757331,18757931-18758488
          Length = 255

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 186 LPGPCPHVVANSLTSVQPLNNGYT*FLES 100
           LP P PHV++N +  +Q L N YT  L S
Sbjct: 180 LPRPTPHVISNIIKIMQNLRNAYTLALPS 208


>11_01_0799 + 7035380-7036148,7036587-7037080
          Length = 420

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +1

Query: 223 GESINKTVKKDKDA---DNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQ--GYRQA 387
           G+   K+ KK K+     NLL      + +++   +++E    P DC  S+ Q  G    
Sbjct: 333 GKPRGKSAKKLKELAGITNLLSSGSILKESDFASDVHSETDSTPSDCSVSLLQKMGVEMC 392

Query: 388 KCSFLEIGTQKFGDDILDLV 447
             S  E+   K G   LDLV
Sbjct: 393 GLSLEEVAESKLGGQKLDLV 412


>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
          Length = 306

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 304 EYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKF 423
           + +E  Y++   CP D  C V Q + QAK   L   +QKF
Sbjct: 225 DLEECPYDDCDNCPSDNNCKVLQAFSQAKNLALVADSQKF 264


>02_01_0232 +
           1543597-1543800,1544189-1544377,1544695-1544859,
           1545199-1545459,1546059-1546271,1546365-1546587,
           1547974-1548149
          Length = 476

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 339 LSQRLHMLCISGIQTSQVQLPRNRY 413
           L QRL +LCI G+ T  +++ R+RY
Sbjct: 445 LMQRLTVLCIRGVSTYPIKIIRSRY 469


>01_01_0145 + 1327172-1327362,1327491-1328169
          Length = 289

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 373 PEIQSICSLW-DRACPRCTKPLGIPRVR 293
           P      S W DRACP C +P+G  R R
Sbjct: 70  PRAAPAASSWMDRACPSCNEPIGDIRCR 97


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 394 CTWLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHI 281
           C  L C P IQ    +  R CP C  P G   VR   I
Sbjct: 752 CFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI 789


>11_01_0193 - 1534051-1534092,1536343-1537065
          Length = 254

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 SFLEI-GTQKFGDDILDLVVENADPRYPINLDDFMFKKL 507
           SFL+    Q+  DD +DLV+   DP + I  D  ++  L
Sbjct: 118 SFLDCYARQQLFDDAVDLVLNQLDPLFGIQADTVVYNHL 156


>06_01_0310 - 2240745-2242130
          Length = 461

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 436 LDLVVENA--DPRYPINLDDFMFKKL-GLHQVATVKIVNSTIGYIAPNAFHGV 585
           LD+  EN   D  +   L DF   KL G  Q   V  V  T GY+AP    GV
Sbjct: 236 LDVKPENILLDDGFRGVLSDFGLSKLVGKEQSRVVTTVRGTTGYLAPEWLLGV 288


>05_03_0066 + 7980038-7981468
          Length = 476

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 143 QFSHSITVTLDFWNLALRSSDVLTRSMKEKQMKSWHTVT 27
           +F   + +TL  +  A ++  VL R +KEK+++S  TVT
Sbjct: 371 RFEGQLALTLLHYGNAGKAKKVLDRKLKEKKVESNSTVT 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,401
Number of Sequences: 37544
Number of extensions: 332378
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)