Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5g24
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 6.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 6.1
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 6.1
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 6.1
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 8.1
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 27 8.1
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 8.1
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 449 SKTQIPATRLI*TTSCSKNSDFTRLLL*KS*TARLVISPPMLSMVSMTFTQSTYPT 616
S+T +++ T +CS + + R + A +V++PP S + +T T +T PT
Sbjct: 2146 SRTMSGTGQIVLTMTCSSSGQWMRNGIGVETVACIVVTPPG-STIPLTTTMATIPT 2200
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 449 SKTQIPATRLI*TTSCSKNSDFTRLLL*KS*TARLVISPPMLSMVSMTFTQSTYPT 616
S+T +++ T +CS + + R + A +V++PP S + +T T +T PT
Sbjct: 2146 SRTMSGTGQIVLTMTCSSSGQWMRNGIGVETVACIVVTPPG-STIPLTTTMATIPT 2200
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 449 SKTQIPATRLI*TTSCSKNSDFTRLLL*KS*TARLVISPPMLSMVSMTFTQSTYPT 616
S+T +++ T +CS + + R + A +V++PP S + +T T +T PT
Sbjct: 2146 SRTMSGTGQIVLTMTCSSSGQWMRNGIGVETVACIVVTPPG-STIPLTTTMATIPT 2200
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 449 SKTQIPATRLI*TTSCSKNSDFTRLLL*KS*TARLVISPPMLSMVSMTFTQSTYPT 616
S+T +++ T +CS + + R + A +V++PP S + +T T +T PT
Sbjct: 2146 SRTMSGTGQIVLTMTCSSSGQWMRNGIGVETVACIVVTPPG-STIPLTTTMATIPT 2200
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 516 PGCYCKNREQHDWLYRPQCFPWCP 587
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 456 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 304
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 497 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 375
NM R+I G FST P F + + H+ C+Y
Sbjct: 93 NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 504 TRTSPGCYCKNREQHDWLY 560
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 454 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 341
+R R R YRF C L+ +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 504 TRTSPGCYCKNREQHDWLY 560
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,823
Number of Sequences: 27780
Number of extensions: 293758
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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