Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5g20
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   1.1  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   1.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   4.3  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   4.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   5.6  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   7.4  

>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 388 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS-RSDGDGLVGV 212
           NG S +       ++D+   S +   D    +FN+ R  R     VN   RSD D L+G+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRE-RFLTEHVNMDERSDDDFLLGL 252

Query: 211 NKSRSNRDGH 182
             S S+ D H
Sbjct: 253 ISSDSSVDDH 262


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 227 ISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIII 349
           +S G  + D + P   G A++  A   V+GAD  P++  ++
Sbjct: 164 VSSGGVMADLWCPAQRGTALIFYAFFVVSGADFGPIISSLV 204


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 358 VHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGD 227
           +HVD +  +GSA+          +  R++ DGL  VN + + G+
Sbjct: 248 LHVDHETGDGSAVGRAILLDDVIDRLRNSPDGLENVNITFNIGE 291


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 322 ISAGDSHRGTFNNGRSNRDGLVGVNKSRS----DGDGLVGVNKS 203
           +  GD  +GTF+ G+    G V +   R+    DG  LV V+KS
Sbjct: 100 VDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPVDKS 143


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -2

Query: 324 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPTEMG 145
           P+AP +    P+T  G  +        + PTE  S  +T A P    T  +  A  T  G
Sbjct: 312 PTAPNSAFTKPATSTGDNKPTFSFGNTSKPTENTSTTATSAPPLSNNTKPAEGANQTSSG 371


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 170 VDTYVPISVGPALVDTYEPI 229
           VDT++PI +GP  V T+  I
Sbjct: 243 VDTHLPIKMGPLDVQTHPNI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,316
Number of Sequences: 5004
Number of extensions: 23376
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)