Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5g20
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 45 2e-05
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 38 0.003
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 31 0.40
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 29 0.91
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 29 0.91
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 29 0.91
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 29 0.91
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 29 0.91
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 1.2
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 28 2.1
U13645-10|AAM15546.1| 418|Caenorhabditis elegans Hypothetical p... 28 2.1
U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical pr... 28 2.1
U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical pr... 28 2.1
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 28 2.1
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 28 2.1
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 3.7
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 3.7
U41034-4|AAY43995.1| 385|Caenorhabditis elegans Hypothetical pr... 27 3.7
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 27 4.9
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 6.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.4
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 6.4
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.4
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.4
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 6.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 6.4
Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical pr... 26 8.5
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 26 8.5
U41015-8|AAA82315.1| 112|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 26 8.5
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 26 8.5
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/77 (36%), Positives = 37/77 (48%)
Frame = -2
Query: 333 RGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPT 154
+ P+ P T+ P+T PT M S +T PT M S +T PT M + +T PT
Sbjct: 169 KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 228
Query: 153 EMGS*VSTRAGPTEMGS 103
M S +T PT M S
Sbjct: 229 TMKSTPTTPTTPTTMKS 245
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/77 (36%), Positives = 37/77 (48%)
Frame = -2
Query: 333 RGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPT 154
+ P+ P T+ P+T PT M S +T PT M S +T PT M + +T PT
Sbjct: 283 KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 342
Query: 153 EMGS*VSTRAGPTEMGS 103
M S +T PT M S
Sbjct: 343 TMKSTPTTPTTPTTMKS 359
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 181 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 240
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 241 TTMKSTPTTPTTPTTMKS 258
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 194 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 253
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 254 TTMKSTPTTPTTPTTMKS 271
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 207 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 266
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 267 TTMKSTPTTPTTPTTMKS 284
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 295 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 354
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 355 TTMKSTPTTPTTPTTMKS 372
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 308 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 367
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 368 TTMKSTPTTPTTPTTMKS 385
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = -2
Query: 336 TRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGP 157
T P+ P T+ P+T PT M S +T PT M S +T PT M + +T P
Sbjct: 321 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 380
Query: 156 TEMGS*VSTRAGPTEMGS 103
T M S +T PT M S
Sbjct: 381 TTMKSTPTTPTTPTTMKS 398
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 333 RGVPSAPVTVTGAPSTMAGPTEMGS*VST----RAGPTEMGS*VSTRAGPTEMGT 181
+ P+ P T+ P+T PT M S +T ++ PT + S+ PT M T
Sbjct: 397 KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMKT 451
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 37.9 bits (84), Expect = 0.003
Identities = 39/104 (37%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Frame = -2
Query: 396 STSTGSAAISEGRFTLMMIWTRGVPSAPVTVTGAPSTMAGPT-EMGS*VSTRAGP-TEMG 223
STS+GS + + T+ S P T +G PST++ T S ST +GP T G
Sbjct: 476 STSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSG-PSTVSERTLSTTSGPSTTSGPSTTSG 534
Query: 222 S*VSTRAG-PTEMGT*VSTRAGP-------TEMGS*VSTRAGPT 115
S VST G T G+ ST +GP T S VST +GP+
Sbjct: 535 STVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTSGPS 578
Score = 37.9 bits (84), Expect = 0.003
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = -2
Query: 309 TVTGAPSTMAGP-TEMGS*VSTRAGPTEMGS*VSTRAGP-TEMGT*VSTRAGP-TEMGS* 139
+ T PST +GP T S VST +GP+ S ST +GP T G+ ST +GP T G
Sbjct: 552 STTSGPSTSSGPSTASRSTVSTTSGPSTT-SGPSTTSGPSTTSGSTKSTTSGPSTTSGKN 610
Query: 138 VSTRAG 121
+ST +G
Sbjct: 611 ISTVSG 616
Score = 36.7 bits (81), Expect = 0.006
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = -2
Query: 396 STSTGSAAISEGRFTLMMIWTRGVPSAPVTVTGAP--STMAGPTEMGS*VSTRAGP---- 235
+TS+G + +SE TL S P T +G+ +T T GS ST +GP
Sbjct: 504 TTSSGPSTVSER--TLSTTSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSS 561
Query: 234 ---TEMGS*VSTRAGPTEMGT*VSTRAGP-TEMGS*VSTRAGPT 115
T S VST +GP+ ST +GP T GS ST +GP+
Sbjct: 562 GPSTASRSTVSTTSGPSTTSG-PSTTSGPSTTSGSTKSTTSGPS 604
Score = 30.3 bits (65), Expect = 0.52
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 312 VTVTGAPSTMAGPTEMGS*VSTRAGP-TEMGS*VSTRAGP-TEMGT*VSTRAG 160
V+ T PST +GP ST +GP T GS ST +GP T G +ST +G
Sbjct: 571 VSTTSGPSTTSGP-------STTSGPSTTSGSTKSTTSGPSTTSGKNISTVSG 616
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 30.7 bits (66), Expect = 0.40
Identities = 37/100 (37%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -2
Query: 396 STSTGSAAISEGRFTLMMIWTRGVPSAPVTVTGAPSTMAGPTEMG-S*VSTRAGPTEMGS 220
S STGS + + T GV S T+TG ST++G T + ST +G TE
Sbjct: 945 SGSTGSTITEGSTISESTMTTVGV-STGSTITGE-STVSGSTRSTVTGESTVSGSTESTV 1002
Query: 219 *VSTRAGPTEMGT*VSTRAGPTEMG-S*VSTRAGPTEMGS 103
ST + PT T VS G T G S VS T GS
Sbjct: 1003 SGSTESTPTVPST-VSGSTGSTVTGESTVSGSTASTSSGS 1041
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 29.5 bits (63), Expect = 0.91
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 179 YVPISVGPALVDTYEPISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 358
Y PIS+ D + P L+DT++P+ P I PVTV+ P +++ +
Sbjct: 435 YPPISLNTRY-DYDSDRDILPLLLDTFQPLPAPPQI---PPVTVSVPVSVP--ELLTSTK 488
Query: 359 RPSEIAADP 385
+PS+ A P
Sbjct: 489 KPSQPAKVP 497
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 122 PALVDTYEPISVGPAL--VDTYVPISVGPALVDTYEP 226
P L+DT++P+ P + V VP+SV L T +P
Sbjct: 454 PLLLDTFQPLPAPPQIPPVTVSVPVSVPELLTSTKKP 490
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 0.91
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 334 EGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSN 155
EG +G S +G NG+S G +++G+G G K ++ + G N
Sbjct: 665 EGDGNKSGGSGKGGAGNGKSGD----GSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSGT 720
Query: 154 RDGFVGVNKSRSNGDG 107
R G + G+G
Sbjct: 721 RAAGKGNAEGNGKGNG 736
Score = 28.7 bits (61), Expect = 1.6
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 376 GNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGVNKSR 200
GN+ +H DD D G + +G NG + D G DGDG N +
Sbjct: 503 GNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNGKGNGTGDGDGDGNGNGNG 562
Query: 199 SNRDGHVGVNKSRSNRDGFVGVNKSRSNGDG 107
DG+ G +N G NGDG
Sbjct: 563 LTGDGN-GTGDGDNNESG-------NGNGDG 585
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 0.91
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 334 EGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSN 155
EG +G S +G NG+S G +++G+G G K ++ + G N
Sbjct: 665 EGDGNKSGGSGKGGAGNGKSGD----GSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSGT 720
Query: 154 RDGFVGVNKSRSNGDG 107
R G + G+G
Sbjct: 721 RAAGKGNAEGNGKGNG 736
Score = 28.7 bits (61), Expect = 1.6
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 376 GNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGVNKSR 200
GN+ +H DD D G + +G NG + D G DGDG N +
Sbjct: 503 GNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNGKGNGTGDGDGDGNGNGNG 562
Query: 199 SNRDGHVGVNKSRSNRDGFVGVNKSRSNGDG 107
DG+ G +N G NGDG
Sbjct: 563 LTGDGN-GTGDGDNNESG-------NGNGDG 585
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 29.5 bits (63), Expect = 0.91
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Frame = +2
Query: 170 VDTYVPISVGPALVDTY---EPISVGPALVDTYE---PISVGPA-IVEGAPVTV------ 310
+ TYVP VG L+D + EPI+ P Y+ + V PA V G P T
Sbjct: 1385 IATYVPKCVGNHLIDIFLQGEPIAGSPFTAKAYDARKTVLVPPANAVVGKPATFVIDAAR 1444
Query: 311 TGADGTPLVQIIINVNRPSEIAAD 382
+GA ++ + N N P+ + A+
Sbjct: 1445 SGAGNMEIIVSVDNRNVPNFVQAE 1468
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 29.5 bits (63), Expect = 0.91
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Frame = +2
Query: 170 VDTYVPISVGPALVDTY---EPISVGPALVDTYE---PISVGPA-IVEGAPVTV------ 310
+ TYVP VG L+D + EPI+ P Y+ + V PA V G P T
Sbjct: 1385 IATYVPKCVGNHLIDIFLQGEPIAGSPFTAKAYDARKTVLVPPANAVVGKPATFVIDAAR 1444
Query: 311 TGADGTPLVQIIINVNRPSEIAAD 382
+GA ++ + N N P+ + A+
Sbjct: 1445 SGAGNMEIIVSVDNRNVPNFVQAE 1468
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.1 bits (62), Expect = 1.2
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -1
Query: 304 HRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSN----RDGHVGVNKSRSNRDGFVG 137
HRG + G G + R G G G + SRS R GH G R R G G
Sbjct: 280 HRGGRHGGHGRHGSCSGSPRGRH-GHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHG 338
Query: 136 VNKSRSNGDG 107
+ SRS G
Sbjct: 339 RHGSRSGSPG 348
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = -1
Query: 388 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVN 209
NG G G + ++ +E + +++R + NN +N G N +DG+ G
Sbjct: 210 NGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND--NDGNSWKGSG 267
Query: 208 KSRSNRDGHVGVNKSRSN 155
S N D G + S SN
Sbjct: 268 NSNGNSDNWGGSSGSGSN 285
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -1
Query: 307 SHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVN---KSRSNRDGHVGVNKSRSNRDGFVG 137
S+ G +N G G N ++ DG N KS +N + + G + ++ DG
Sbjct: 204 SNSGGYNGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTNDNDGNSW 263
Query: 136 VNKSRSNGD 110
SNG+
Sbjct: 264 KGSGNSNGN 272
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -1
Query: 289 NNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 110
NN R++ G N + ++ + G SN G G N + + DG + + NG
Sbjct: 426 NNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNNGNDGNNWESNNGGNGG 485
Query: 109 G 107
G
Sbjct: 486 G 486
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = -1
Query: 388 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVN 209
NG G G + ++ +E + +++R + NN +N G N +DG+ G
Sbjct: 210 NGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND--NDGNSWKGSG 267
Query: 208 KSRSNRDGHVGVNKSRSN 155
S N D G + S SN
Sbjct: 268 NSNGNSDNWGGSSGSGSN 285
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -1
Query: 307 SHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVN---KSRSNRDGHVGVNKSRSNRDGFVG 137
S+ G +N G G N ++ DG N KS +N + + G + ++ DG
Sbjct: 204 SNSGGYNGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTNDNDGNSW 263
Query: 136 VNKSRSNGD 110
SNG+
Sbjct: 264 KGSGNSNGN 272
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -1
Query: 289 NNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 110
NN R++ G N + ++ + G SN G G N + + DG + + NG
Sbjct: 426 NNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNNGNDGNNWESNNGGNGG 485
Query: 109 G 107
G
Sbjct: 486 G 486
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 370 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 284
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>U13645-10|AAM15546.1| 418|Caenorhabditis elegans Hypothetical
protein C05D10.4c protein.
Length = 418
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 379 SGNLGRTVHVDDDLDEGSAI--SAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNK 206
+G T+ VDDD + + RGT NN R + V + KS D D +
Sbjct: 134 TGEFKTTITVDDDHQPTAVMRPKKESDTRGTLNNNRYSFQSCVQLRKSCPDLD-----ST 188
Query: 205 SRSNRDGHVGVNKSRSNR 152
+ SN + H V+K R+ R
Sbjct: 189 AMSNMEQH-RVSKKRTRR 205
>U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical
protein C05D10.4b protein.
Length = 597
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 379 SGNLGRTVHVDDDLDEGSAI--SAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNK 206
+G T+ VDDD + + RGT NN R + V + KS D D +
Sbjct: 313 TGEFKTTITVDDDHQPTAVMRPKKESDTRGTLNNNRYSFQSCVQLRKSCPDLD-----ST 367
Query: 205 SRSNRDGHVGVNKSRSNR 152
+ SN + H V+K R+ R
Sbjct: 368 AMSNMEQH-RVSKKRTRR 384
>U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical
protein C05D10.4a protein.
Length = 565
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 379 SGNLGRTVHVDDDLDEGSAI--SAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNK 206
+G T+ VDDD + + RGT NN R + V + KS D D +
Sbjct: 281 TGEFKTTITVDDDHQPTAVMRPKKESDTRGTLNNNRYSFQSCVQLRKSCPDLD-----ST 335
Query: 205 SRSNRDGHVGVNKSRSNR 152
+ SN + H V+K R+ R
Sbjct: 336 AMSNMEQH-RVSKKRTRR 352
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -1
Query: 331 GSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNR 152
GS S + + NN S+ + G N S S N + N +G+ N N
Sbjct: 197 GSVGSGSGNSGNSSNNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNG 256
Query: 151 DGFVGVNKSRSNGDG 107
+ G N + SNG+G
Sbjct: 257 NSN-GNNGNGSNGNG 270
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 370 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 284
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 354 TLMMIWTRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VST 208
T ++ T P+ PVT T PS+ PT + V+ A T V+T
Sbjct: 568 TTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTT 616
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 354 TLMMIWTRGVPSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VST 208
T ++ T P+ PVT T PS+ PT + V+ A T V+T
Sbjct: 624 TTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTT 672
>U41034-4|AAY43995.1| 385|Caenorhabditis elegans Hypothetical
protein M02D8.7 protein.
Length = 385
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 161 PALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAIVE--GAPVTVTGA---DG 325
P LV P++ PA ++ + VDTYE + P I + G P+++TG G
Sbjct: 62 PDLVIYEGPMNKRPAHNMQFQMREIKAEPVDTYETTTPAPTIQQPPGFPMSITGGIPQMG 121
Query: 326 TPLVQ 340
PL+Q
Sbjct: 122 PPLLQ 126
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 27.1 bits (57), Expect = 4.9
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 280 RSN-RDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNK--SRSNRDGFVGVNKSRSNGD 110
RSN R G ++SRS RS RDG VG N+ RS RD +S D
Sbjct: 239 RSNDRHGRDRRSRSRSQSRDRNRRRDDRSGRDGRVGRNERDDRSGRDERRDDRRSAPTKD 298
Query: 109 GL 104
G+
Sbjct: 299 GI 300
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 26.6 bits (56), Expect = 6.4
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = +2
Query: 107 PISVGPALVDTYEPISVGPALV-DTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPA 283
P PA + PAL Y P PA ++ PAL Y P V A
Sbjct: 46 PAFAAPAYAPALGAPAYAPALAAPAYAPGLAAPAFAPA-PVVAAAPALAPAYAPAPVVAA 104
Query: 284 IVEGAPVTVTGADGTPLV 337
AP +P++
Sbjct: 105 APAFAPAYAPAPVASPMI 122
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 324 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMG 223
P+ P GAP GP E G+ S + GP E G
Sbjct: 190 PAGPAGNDGAPGAPGGPGEPGA--SEQGGPGEPG 221
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 391 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 254
I G+ G G + D +G++ G GTFN+G GL G
Sbjct: 330 IPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPG 375
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 391 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 254
I G+ G G + D +G++ G GTFN+G GL G
Sbjct: 329 IPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPG 374
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 324 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMG 223
P+ P GAP GP E G+ S + GP E G
Sbjct: 190 PAGPAGNDGAPGAPGGPGEPGA--SEQGGPGEPG 221
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 391 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 254
I G+ G G + D +G++ G GTFN+G GL G
Sbjct: 329 IPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPG 374
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 391 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 254
I G+ G G + D +G++ G GTFN+G GL G
Sbjct: 330 IPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPG 375
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 391 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 254
I G+ G G + D +G++ G GTFN+G GL G
Sbjct: 366 IPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPG 411
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 324 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMG 223
P+ P GAP GP E G+ S + GP E G
Sbjct: 190 PAGPAGNDGAPGAPGGPGEPGA--SEQGGPGEPG 221
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 324 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMG 223
P+ P GAP GP E G+ S + GP E G
Sbjct: 190 PAGPAGNDGAPGAPGGPGEPGA--SEQGGPGEPG 221
>Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical protein
F23B12.7 protein.
Length = 953
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/74 (22%), Positives = 25/74 (33%)
Frame = -1
Query: 349 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 170
DD+ D+ G S F + + D +G N GD + + DG G
Sbjct: 871 DDEDDDEDGGFGGKSSANIFGDADESSDEEIGANDYEMAGDKFAEMLEDLEEDDGKRGKK 930
Query: 169 KSRSNRDGFVGVNK 128
K R G +
Sbjct: 931 KGGKKRGSTGGFKR 944
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 37 EICDHHRRLRCRGHSRPC-PWQVRAHLRWTCSC 132
E+C+H L C S PC P +A +R +C C
Sbjct: 733 ELCEHPCALPCHEDS-PCEPSPCKASVRISCEC 764
>U41015-8|AAA82315.1| 112|Caenorhabditis elegans Hypothetical
protein F20B6.7 protein.
Length = 112
Score = 26.2 bits (55), Expect = 8.5
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 343 DLDEGS-AISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNK 167
D D+GS G + G +G ++RDGL+ + + R DG + K+ G+N
Sbjct: 3 DDDKGSDGWMDGSTTIGMDRSG-ADRDGLISIKRRRMDGRKGWMMLKAVIEETLDNGLN- 60
Query: 166 SRSNRDGFVGVNKSR 122
++N+D ++G + R
Sbjct: 61 GQANQDEWIGTRRRR 75
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 327 VPSAPVTVTGAPSTMAGPTEMGS 259
+PSAPV++ G PS+ GS
Sbjct: 131 IPSAPVSIAGTPSSRHNSISAGS 153
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 349 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDG 224
+DD D+G +A +++ G + G + G+ + K DG G
Sbjct: 132 EDDDDDGYTQAAANTNYGENDGGNNENHGMGSLIKGAMDGFG 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,219,679
Number of Sequences: 27780
Number of extensions: 152999
Number of successful extensions: 625
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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