Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5g20
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.18 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 328 SAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 188
           S I+AG+++    NN  +N +     N +  +G+G  G + + +N D
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNG-NGASNNNNNGD 271


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 333  RGVPSAPVTVTGAPSTMAGP 274
            R VPSA + V   P   AGP
Sbjct: 990  RSVPSAELIVRTEPQRPAGP 1009


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 333  RGVPSAPVTVTGAPSTMAGP 274
            R VPSA + V   P   AGP
Sbjct: 986  RSVPSAELIVRTEPQRPAGP 1005


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 164 ALVDTYVPISVGPALVDTYEPISV 235
           ++V T++ +   PAL D  +PI +
Sbjct: 497 SIVGTFIILCEAPALRDNTKPIDM 520


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 245 EQVRRRWARRCQQEQVQQRW 186
           +Q +++  ++ QQ+Q QQ W
Sbjct: 445 QQQQQQQQQQQQQQQQQQHW 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,605
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)