Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5g08
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 80 2e-16
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 54 2e-08
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 3e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 36 0.005
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 1.4
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 1.9
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 2.5
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 80.2 bits (189), Expect = 2e-16
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +3
Query: 237 ILDNGAYTAKVGFSNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGF 416
+LDNGAY K GF+ K IPNC+ ++K + R F+G++L C D + L + +KG+
Sbjct: 9 VLDNGAYHIKAGFAGGKVVEIPNCLTRSK-DGNRLFLGNELANCNDFTTLQFRRAHEKGY 67
Query: 417 LVNWDTQKTVWDFIF-SKECCPVNFNDTPLIITEPLFNFASIQ 542
LV+W T+ VWD + + + D L++T+P+F SI+
Sbjct: 68 LVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIE 110
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Frame = +3
Query: 210 TKMSETSCYILDNGAYTAKVGFSNSK--SRIIPNCIMKAKSERRRP-------FIGSQLD 362
T++ + +DNG+ K GF+ + P C+ + K ER P F+GS+
Sbjct: 4 TEIFDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Query: 363 ECRDASGLFYIL-PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNFASI 539
R GL I P ++G + NW + +W +I+S + + PL++TEP
Sbjct: 64 NLR---GLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 540 QEAMTEIF 563
+E + E F
Sbjct: 121 KEKIAEYF 128
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Frame = +3
Query: 222 ETSCYILDNGAYTAKVGFSNSKS--RIIPNCIMKAKSERRRPFIGSQL----DECRDASG 383
E + ++DNG+ K GF+ + + P+ + + + +G + DE + G
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRG 63
Query: 384 LFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNFASIQEAMTEI 560
+ + P + G + NWD + +W F E V + P ++TE N S +E MT+I
Sbjct: 64 ILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPCLLTEAPLNPKSNREKMTQI 122
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.2 bits (97), Expect = 3e-05
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +3
Query: 237 ILDNGAYTAKVGFSNSKSR--IIPNCIMK---AKSERRRPFIGSQ-LDECRDASGLFYIL 398
++DNG++ + G+ K + N + + K R +G+ L E S
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLIEVGSRS--IARS 85
Query: 399 PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNFASIQEAMTEI 560
PF++ + NWD + V D+ F K ++ + P+ +TEPL N ++ MTE+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFLK--LGIDRMEHPICMTEPLANPTYVRSTMTEL 137
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 35.5 bits (78), Expect = 0.005
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +3
Query: 222 ETSCYILDNGAYTAKVGFSNSK------SRIIPNCIMKAKSERRRPFIGSQL--DECRDA 377
E++ +LDNG KVG++ I+ I++A+ + I + DE
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 378 SGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNFASIQEAMT 554
L + P + G + +++ +WD+ F E ++ +++TEP N + +E M
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFF-EKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 555 E 557
E
Sbjct: 121 E 121
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 393 ILPFQKGFLVNWDTQKTVWDFIFS 464
I P Q+G +V+W+ K W ++S
Sbjct: 111 IQPIQRGRVVDWEALKAFWKHLYS 134
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 273 FSNSKSRIIPNCIMKAKSERRRPFIGSQLDEC 368
FSN KS++IPNC S PF + C
Sbjct: 644 FSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTC 675
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 315 KAKSERRRPFIGSQLDECRDASG 383
+AKSERRRP D C D+SG
Sbjct: 948 EAKSERRRPSRLIFYDNCGDSSG 970
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,684
Number of Sequences: 5004
Number of extensions: 44463
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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