Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f23
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   3e-04
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   1.1  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   2.6  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   4.6  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    23   6.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    23   6.1  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   6.1  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   6.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   8.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    23   8.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   8.0  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 42  STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 206
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 130 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR 11
           SN  S+K VPP+  +        T R   D+TD    FSR
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSR 494


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 69  RTSTFALAVAGGTFFFERT 125
           R ST   A A GTFFF R+
Sbjct: 10  RCSTALSAAAAGTFFFRRS 28


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 17  ENFQNVRVVYIKSYCFQTYIYVCFGCCRRNV 109
           E ++  R   I ++   + +Y+ F  CRRN+
Sbjct: 88  EVYKEYRDFMISTFRLNSKVYLTFTACRRNL 118


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 69  RTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQ 224
           +T  F++A AG +  F+  F   ++ +  + N G   ++I  KY +   NVQ
Sbjct: 9   QTGRFSVA-AGPSVRFQAGFLAANRQVRFSSNHGVSLEEINTKYNDFFSNVQ 59


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 129 ELVSQSIFENLNKGKLWKDIKH 194
           E+ +++I++ LNK ++ K+ KH
Sbjct: 621 EIYNETIYDLLNKAEMLKNPKH 642


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 205 FSYLCLMSFHNFPLLRFSNID*DTN--SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTD 32
           F Y     FHN P    S+    T+  SNV S ++V PA+   N +           H +
Sbjct: 310 FWYNPSKGFHNRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHEE 369

Query: 31  ILKIFSRKKK 2
            LK  +  KK
Sbjct: 370 RLKRINANKK 379


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 17  ENFQNVRVVYIKSYCFQTY 73
           + F  V +VYI S+CF  Y
Sbjct: 204 KEFSEVDIVYICSFCFCYY 222


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 166 LLRFSNID*DTNSNVLSKKNVPPATAKANV 77
           LL+  N+D   NS  LSK++  P+ A   V
Sbjct: 37  LLKPDNVDKPANSIPLSKRSTSPSYAPYTV 66


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 139 LNRYLKTSTKENYGRTSSTNM 201
           +N Y  TS  E  G  SSTN+
Sbjct: 28  VNEYSSTSKFETLGNQSSTNL 48


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 128 KCSFKEERSSGNSQSKRRCTFENSTI*CRPHGHFENFLKKK 6
           +C F    S+ N   K    + N +  C   G  E F +KK
Sbjct: 560 ECQFSNSESNKNDFEKWYTRYANGSPICSEMGKKEFFWRKK 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,359
Number of Sequences: 5004
Number of extensions: 19382
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)