Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f21
         (486 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.12 
UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep: Zgc:1...    33   4.5  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.9 bits (84), Expect = 0.12
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  AGWWYLPVRTHKTSYHQ 3
           A WWYLP RTHK SYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep:
           Zgc:153909 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 262

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 157 TTHL*VMSCKVSL*TVQRLPHPSNRNALL-LHGRTRQGG 44
           T H+    CKV++    RL HP  R  ++ LHG+ R GG
Sbjct: 75  TAHINNQLCKVNMNVKARLGHPVGRGGMMGLHGQMRGGG 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,716,331
Number of Sequences: 1657284
Number of extensions: 7709849
Number of successful extensions: 14722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14720
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)