Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f21
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.9  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   7.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 170 QRKCHHPPLSHEL*GLTLNSTTAAPPFKPKRITASRQN 57
           Q   HH P+SH L       T++  PF   R+  + ++
Sbjct: 344 QAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAES 381


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 441  GNIIYINLFKIQILVDMYSIFNL 373
            G I Y+ +  + +L+ +YS+FN+
Sbjct: 1005 GVIYYVTVPSMYLLLVIYSVFNM 1027


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 441  GNIIYINLFKIQILVDMYSIFNL 373
            G I Y+ +  + +L+ +YS+FN+
Sbjct: 1005 GVIYYVTVPSMYLLLVIYSVFNM 1027


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 245 IAIVCIYFNH*H*IKMTV*IIYLQC-GCPTIPLEFLCKIVF 364
           I ++C+Y+ +   I  TV +++L C     +PL FL  I +
Sbjct: 108 IILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYY 148



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 242 IIAIVCIYFNH*H*IKMTV*IIYLQC 319
           +I ++CIY+ +   I  TV ++ L C
Sbjct: 232 LIILLCIYYFYYAFILFTVHLLLLVC 257


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 441 GNIIYINLFKIQILVDMYSIFNLTCENTIL 352
           G  IY+  F    + D  ++ +  C NT++
Sbjct: 323 GQFIYLRTFGFLEIDDQGTVESFVCVNTLV 352


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 317 CGCPTIPLEFLCKI 358
           C CP+  L ++C+I
Sbjct: 246 CSCPSGTLGYICEI 259


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 376 IKY*IHIDQYLYFEXXXXXXXTNRYYQVL 462
           ++Y + +  YL F+         +YYQ+L
Sbjct: 138 VRY-VFVTSYLLFDYFVQRNQEYKYYQIL 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,076
Number of Sequences: 336
Number of extensions: 2225
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)