Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f21
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.75 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 326 PTIPLEFLCKIVFSHVRLNIEYISTSICILNKLM*IMLPIGTI 454
           PT+ + FLC +VF       E ++  I IL  L+  +L +  I
Sbjct: 243 PTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKI 285


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = -2

Query: 149  PLSHEL*GLTLNSTTAAPPFKPKRITASRQN*AGWWYLPVRTHKTSYHQ 3
            PLS  L   T+    + PP   +    + Q+    W  P  TH     Q
Sbjct: 1097 PLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = -2

Query: 149  PLSHEL*GLTLNSTTAAPPFKPKRITASRQN*AGWWYLPVRTHKTSYHQ 3
            PLS  L   T+    + PP   +    + Q+    W  P  TH     Q
Sbjct: 1093 PLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,973
Number of Sequences: 438
Number of extensions: 2429
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)