Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5f20
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 33 0.18
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 30 1.3
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 30 1.3
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454 29 2.2
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 29 2.9
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.8
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 29 3.8
04_01_0618 - 8094991-8097288 29 3.8
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 28 6.7
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 27 8.9
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 27 8.9
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 306 SLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVIL 482
S D+AC + DE + L E+Y ++ +Q L ++ +W + + A+P+ V+L
Sbjct: 412 SPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEALPIYVVL 470
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 333 LNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTG 512
L+ S L+L Q T N + +Q+W N + + V + G WS T
Sbjct: 581 LSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAASCVSVAGLFISGEWSSLTA 640
Query: 513 K 515
+
Sbjct: 641 E 641
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 228 DNTTVEPIMACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEEN 407
D T +PI + + + N S DKAC++ N DE L ENY ++
Sbjct: 153 DLTPTDPIRLGLALNISVFYCEIMN-SPDKACQLAKNAFDEAVAELPSLSEENYKDSTLI 211
Query: 408 VQRLIASVQVWKN 446
+Q L ++ +W +
Sbjct: 212 MQLLRDNLALWNS 224
>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
Length = 249
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 429 HSLSVFVRFLPPPCSFPFVVMLKPC-RP 349
H+ S+FV LP PC P V L C RP
Sbjct: 123 HTPSIFVADLPLPCGLPVAVALDMCLRP 150
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 105 DLKVCDDEECSKGSHETCPLKSEN 176
D++VCD + C KG H C K E+
Sbjct: 25 DIRVCDFKNCLKGYHPHCVGKEES 48
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 380 GKLHGGGRKRTKTDSECPSLEKRCANGYTSMCDII 484
G GGGR KT EC L KR + T+ C +
Sbjct: 371 GNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSAL 405
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 108 LKVCDDEECSKGSHETCPLKSENVREIKKLTFK 206
L+VC + C HETC L+ E + +LT K
Sbjct: 186 LEVCLEFACKSLEHETCTLEKEAYPALDELTSK 218
>04_01_0618 - 8094991-8097288
Length = 765
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 438 WKNVVQTAIPVCVILFVG--AWSDKTGKRKACILLPIVGEFLSC 563
W+ VV V V ++V AWS K KA +LL IVG C
Sbjct: 110 WRQVVTLVSQVTVAMYVFCLAWSGKKILLKAAVLLFIVGILKFC 153
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 261 YVMPSV--LASLAVQNLSLDKACRVNLNYSDEVCTAL 365
Y +P+ +A LAVQ LS+D CR + D+V TAL
Sbjct: 330 YSLPAAQKIAGLAVQCLSMDARCRPGM---DQVVTAL 363
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 413 KTDSECPSLEKRCANGYTSMCDIIRRGVERQDW 511
+ D E P L SM D I++GV+ +DW
Sbjct: 290 ENDIETPRLNHYTEEKVISMIDAIKKGVKLKDW 322
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 413 KTDSECPSLEKRCANGYTSMCDIIRRGVERQDW 511
+ D E P L SM D I++GV+ +DW
Sbjct: 257 ENDIETPRLNHYTEEKVISMIDAIKKGVKLKDW 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,098
Number of Sequences: 37544
Number of extensions: 332984
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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