Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f20
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical p...    34   0.092
Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical pr...    31   0.49 
AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    31   0.86 
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.0  
U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical
           protein F40F9.5 protein.
          Length = 585

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 15/54 (27%), Positives = 34/54 (62%)
 Frame = +3

Query: 399 EENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLS 560
           +++V++ IA+ +++  ++ T   + V   +G WSD+ G RK+ +L  + G F++
Sbjct: 118 QDDVEKDIANTKIYLQIMGTIPTLIVSPLIGNWSDRNG-RKSPLLFSLFGLFIN 170


>Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical
           protein M106.7 protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 29/123 (23%), Positives = 53/123 (43%)
 Frame = +3

Query: 63  RPQKYLLCNTMAVKDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKLIKDNTTV 242
           + ++ +L N   +  L     EE +K  HE C   S  + E KK  +      +  N  V
Sbjct: 5   KTRETMLTNQEVLSFLNALKKEEDNKQQHERCKQLSTVIYETKK--YLNTSPAVTQNEAV 62

Query: 243 EPIMACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLI 422
                C ++P  LA   +      +   +NL  S      L + +TE    +EE++++L+
Sbjct: 63  ----ICELIPK-LAPFKLTGAETLQV--INLRPSTTADIQLLIEETEERFPSEEDLEKLV 115

Query: 423 ASV 431
           ++V
Sbjct: 116 STV 118


>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 24/112 (21%), Positives = 49/112 (43%)
 Frame = +3

Query: 261 YVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVW 440
           Y++ S L     QNL  +K C +    ++  C  ++    +   +A  N    I+S+ + 
Sbjct: 17  YMLGSYLNYPVFQNLIYEKECLIKYQQNETFCRNVSAYYDDKDIQAAANHFYFISSLTLL 76

Query: 441 KNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVNTYFFY 596
              + T       L +GA +D     K  +++P +G  L  + ++  +YF +
Sbjct: 77  CPSLVTT------LLLGAATD-YWSIKIPLIIPYIGCILGTINYVFQSYFIH 121


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/70 (20%), Positives = 34/70 (48%)
 Frame = +3

Query: 270 PSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNV 449
           P  + ++A++ +S  +AC  +++ S  V       +   ++  +      +AS++ W+N 
Sbjct: 490 PVAIKTIALRTMSFLEACLQSVDVSRSVLPYSNSTKLNKFSVPDVQSINDLASLEQWRNA 549

Query: 450 VQTAIPVCVI 479
            +  I  CV+
Sbjct: 550 NELEIENCVV 559


>Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical
           protein T19C4.5 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 200 CKLFYFANVF*FQRACFVRSFRALFIVTNFQV 105
           C + +F N+F     C+VRS    F+++N  +
Sbjct: 8   CLVLFFGNIFGSSENCYVRSSIFNFLISNLSI 39


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical protein
            F18C5.3 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 90   TMAVKDLKVCDDEECSKGSHETCPLKSENVRE 185
            ++ V++LK   DEE SK + E C L  + + E
Sbjct: 1379 SLLVRELKTSSDEELSKLTQEVCGLVKKKIGE 1410


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -2

Query: 559 DKNSPTIGSKMHAFLLPVLSLHAPTNNITHTGIAVCTTF-FQTWTLAISLCTFSSASV*F 383
           + + PT  S + A++LP+ +   P+ + T T   +  TF  Q  T +         +  F
Sbjct: 279 ETSKPTFPSTLPAYVLPMTTTSHPSTHTTTTQKVIARTFASQPHTTSQPKIVVKLLNDSF 338

Query: 382 SVCRNVKAVQTSSE*LRLTLQALSK 308
           S     KA  T S   R ++  LS+
Sbjct: 339 SNSTTDKAKSTESSASRASVSELSR 363


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -2

Query: 559 DKNSPTIGSKMHAFLLPVLSLHAPTNNITHTGIAVCTTF-FQTWTLAISLCTFSSASV*F 383
           + + PT  S + A++LP+ +   P+ + T T   +  TF  Q  T +         +  F
Sbjct: 279 ETSKPTFPSTLPAYVLPMTTTSHPSTHTTTTQKVIARTFASQPHTTSQPKIVVKLLNDSF 338

Query: 382 SVCRNVKAVQTSSE*LRLTLQALSK 308
           S     KA  T S   R ++  LS+
Sbjct: 339 SNSTTDKAKSTESSASRASVSELSR 363


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 99  VKDLKVCDDEECSKGSHETCPLKSENV-REIKKLTFKQRLKLIKDN-TTVEPIMACYVMP 272
           V  + +CD  + S+ S  TC LK++ V R+I KL      KL  +N  T +P+   YV+ 
Sbjct: 248 VLQMDICDMLQLSRTSSNTC-LKTKKVNRKIYKLMISDP-KLHDNNLITEDPLRQVYVIE 305

Query: 273 S 275
           S
Sbjct: 306 S 306


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 350 GLHGFNITTNGKLHGGGRKRTKTDSECPSLEKRCANGY 463
           G  G+N   +G  +G    R   +S+C S  + C++GY
Sbjct: 195 GSSGYNTYGSGNTYGSSNSRCTYNSDCGS-NRYCSSGY 231


>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 476 HTYWYSRLH-NVFPNLDTRYQSLYVFFRLRVVFRLS 372
           H Y+Y R H ++ PN+  ++ +  V  R+R++F LS
Sbjct: 42  HIYYYIRFHEHIAPNI-AKWDNFNVTTRIRMMFALS 76


>U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical
           protein C16D9.6 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 551 FTNYRQQNARFSFTSLVAPRPDE*YHTYWYSR--LHNVFPNLDTRY 420
           FT+ R  + R  ++++    PD+ Y+ ++ SR   H+++ N+ + +
Sbjct: 130 FTSERFNDTRIPYSTVFKGIPDDYYNLFFKSRYAFHHIYTNISSEF 175


>AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical
           protein Y71A12B.8 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 150 REILSSTLHRHKLSGL*QPLYCIIDTFVVDSEF-NENQTV 34
           RE+  +TLH+H L  L   L+  +D+  V S+  N NQ V
Sbjct: 83  RELKGTTLHKHDLKHLAVSLHSSLDSVKVGSKAENVNQEV 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,014
Number of Sequences: 27780
Number of extensions: 315297
Number of successful extensions: 1003
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)