Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f16
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038...    25   6.4  
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207...    25   8.5  

>11_08_0009 +
           27600881-27602592,27602665-27603008,27603159-27603806,
           27603908-27604296
          Length = 1030

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 72  NNQSNEIV-NIPNSLFLFLYDIVFLNCCNNSIN 167
           N Q+N +  +IPNSLF     + +LN  NNS++
Sbjct: 186 NIQNNGLTGSIPNSLFNNTPLLSYLNIANNSLS 218


>08_01_0254 +
           2078380-2078392,2078487-2078578,2079579-2079698,
           2079924-2080097,2080184-2080257,2080847-2080927,
           2081306-2081366,2081437-2081486,2082278-2082332,
           2082599-2082676,2082757-2082810,2083703-2083756,
           2083846-2083906,2084229-2084280,2085118-2085184,
           2085393-2085452,2085546-2085608,2085752-2085814,
           2086337-2086401,2086620-2086688,2086742-2086847
          Length = 503

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   LCCIKYCKSYILSPPSRLISCKII 78
           LCC    K+Y L   S+ ISCK++
Sbjct: 54  LCCRGSEKTYNLVTYSKTISCKVV 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,966,394
Number of Sequences: 37544
Number of extensions: 49671
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)