Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f16
         (194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   0.60 
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   0.60 
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    26   4.3  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    26   4.3  
U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine rec...    25   5.6  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF038614-3|AAB92057.1|  164|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 167
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 167
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +2

Query: 11  VV*NIVNLIYYRRRLVS*VAK*SIER 88
           VV ++++++YYRRRL+S V + S ++
Sbjct: 102 VVASLLHMMYYRRRLMSSVRRLSTQK 127


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +2

Query: 11  VV*NIVNLIYYRRRLVS*VAK*SIER 88
           VV ++++++YYRRRL+S V + S ++
Sbjct: 102 VVASLLHMMYYRRRLMSSVRRLSTQK 127


>U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein95 protein.
          Length = 306

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  IVNIPNSLFLFLYDIVFLNCCNNSI 164
           +V +P+  FL L+D + +  CNN I
Sbjct: 257 LVALPSMAFLALFDGLIMLLCNNDI 281


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 99  IPNSLFLFLYDI--VFLNCCNNSI 164
           I N+ F+F+Y I  V +N CNN++
Sbjct: 82  IVNNFFVFMYYIFLVLVNVCNNNL 105


>AF038614-3|AAB92057.1|  164|Caenorhabditis elegans Hypothetical
           protein F15E6.5 protein.
          Length = 164

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 87  EIVNIPNSLFLFLYDIVFLNCC 152
           +I+ IP++  L L D++ +NCC
Sbjct: 36  KILEIPSNYPLTLNDLLIINCC 57


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
            F35G12.8 protein.
          Length = 1549

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 178  TCYLLIELLQQFKNTMSYKNKNKL 107
            TC L  E+ Q+F  TMS +NK  +
Sbjct: 1384 TCTLPDEVTQRFNETMSRQNKEMI 1407


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 LYDIVFLNCCNNSINK*HVFVK 188
           LY+ +  NCCNN+I    ++ K
Sbjct: 225 LYNDIARNCCNNNIGTCDIYSK 246


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 123 LYDIVFLNCCNNS 161
           LY++VFL+ C+NS
Sbjct: 247 LYEVVFLDACDNS 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,999,110
Number of Sequences: 27780
Number of extensions: 60342
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)