Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f15
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412...    66   2e-11
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    65   5e-11
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    61   8e-10
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    52   4e-07
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...    33   0.23 
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    29   2.2  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   2.9  
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   3.8  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    28   5.0  

>09_06_0267 +
           21938300-21938371,21938963-21939235,21940665-21941202,
           21941288-21941490,21941603-21941827
          Length = 436

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 47/71 (66%)
 Frame = +1

Query: 397 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 576
           + A+   G+G+F   +LA  G+   SE M+++ +SF+  S Q + +L+ Q +  + S++F
Sbjct: 35  DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94

Query: 577 IGMMVGAYAWG 609
           +GM+VGAY+WG
Sbjct: 95  VGMLVGAYSWG 105


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 25/69 (36%), Positives = 47/69 (68%)
 Frame = +1

Query: 403 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIG 582
           A+  +G+GR+  ++L+  G+   +E M+++ +SF+ PS Q +  LT+  +  + SI+F+G
Sbjct: 15  ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVG 74

Query: 583 MMVGAYAWG 609
           M++GAY WG
Sbjct: 75  MLIGAYTWG 83


>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 24/78 (30%), Positives = 48/78 (61%)
 Frame = +1

Query: 376 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG 555
           N E    + A+E  G+G+F  ++LA  G+    E M+++ +SF+ P  + + +++ + + 
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENES 254

Query: 556 WLNSIIFIGMMVGAYAWG 609
            L+S++F GM++GA  WG
Sbjct: 255 LLSSVVFAGMLIGASGWG 272


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 49/85 (57%)
 Frame = +1

Query: 355 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLD 534
           ++ E+    E    + A+   G+GRF  ++LA   +   +E M+V+ +SF+ PS + +  
Sbjct: 6   AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWG 65

Query: 535 LTTQTKGWLNSIIFIGMMVGAYAWG 609
           ++   +G ++S++F GM++GA   G
Sbjct: 66  VSGAAEGLVSSVVFAGMLIGACLGG 90


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 608 PQAYAPTIIPMKIILFSHPLV*VVRSKSHCAEGR--MNDIEMTSISSEVLTRP 456
           PQ   P      I+LF  P++  VR++ +  E      D++M  I   VLTRP
Sbjct: 215 PQEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRP 267


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 434 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 526
           T CCW +    AL R WT  R RS    H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 456 RSRQHFRGDGRHLDVVHPTLGTVRLRPHHSD*RMA---KQYNLHR 581
           RS  H + D       H T+GT R+ PHHS  R+A    +Y  HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869


>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 215
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 380 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 294
           E+ P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,378
Number of Sequences: 37544
Number of extensions: 467452
Number of successful extensions: 1303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)