Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f12
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   6.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.1  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/22 (27%), Positives = 10/22 (45%)
 Frame = -2

Query: 508 HCQWLWSLVP*ISLLQPWWPVW 443
           HC WL+ +    +    +W  W
Sbjct: 98  HCDWLYGIFGHETSCTRYWTCW 119


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 443 PHRPPWLQQRDSRHQRP 493
           PH+ P +QQ+ ++ Q+P
Sbjct: 204 PHQQPPIQQQPNQGQQP 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 443 PHRPPWLQQRDSRHQRP 493
           PH+ P +QQ+ ++ Q+P
Sbjct: 206 PHQQPPIQQQPNQGQQP 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,434
Number of Sequences: 336
Number of extensions: 2434
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)