Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f12
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          111   3e-25
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   107   5e-24
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    31   0.93 
04_04_0360 - 24684159-24684565,24684654-24685089                       29   2.1  
11_05_0071 - 18821475-18821609,18821691-18822065,18822142-188226...    28   6.5  
04_01_0377 - 4970034-4970687                                           28   6.5  
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    28   6.5  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  111 bits (268), Expect = 3e-25
 Identities = 49/78 (62%), Positives = 66/78 (84%)
 Frame = +1

Query: 247 SKQSRGEKKARKIMSKLGLXPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 426
           SKQSR EKK+RK M KLG+ PV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 427 KIEDLSTQATMAAAERFK 480
           KIEDLS+Q    AA++F+
Sbjct: 135 KIEDLSSQLQAQAAQQFR 152


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  107 bits (258), Expect = 5e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%), Gaps = 19/108 (17%)
 Frame = +1

Query: 223 AGIDIVSKSKQSRGEKKARKIMSKLGLXPVQGVERVTIRKSKN----------------- 351
           AG D   +SKQSR EKK+RK M KLG+  + GV RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 352 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 489
             ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q    AAE+FKAP+
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 398 QTPTLFLVKPRLKICPHRPPWLQQRDSRHQRPQPLA 505
           Q P    ++ +L   P +PP LQ +   HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279


>04_04_0360 - 24684159-24684565,24684654-24685089
          Length = 280

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 525 SSCGSVIASGCGLWCLESLCCSHGGLCG 442
           S+ G   A  CG  C  ++CCS  G CG
Sbjct: 14  SATGQASAQNCG--CQSNMCCSKWGYCG 39


>11_05_0071 -
           18821475-18821609,18821691-18822065,18822142-18822674,
           18822776-18823331,18824593-18824621,18824970-18825018
          Length = 558

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 256 SRGEKKAR-KIMSKLGLXPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFG 420
           + G +KAR KI   L L  +    R+ + + KNI+   +  +  +   SD Y +FG
Sbjct: 141 NNGAEKARSKIFGPLVLLQLWSWSRLPLGRPKNIIQKTDEVEEQEEEESDGYPIFG 196


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 537 CYRRSSCGSVIASGCGLWCLESLCCSHGGLCG 442
           C     CGS    G G  C  + CCS  G CG
Sbjct: 58  CCSSQRCGS---QGGGATCSNNQCCSQYGYCG 86


>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 154 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 68
           S C  +QSL+ ++   +RWP  V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,788
Number of Sequences: 37544
Number of extensions: 269330
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)