Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f12
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 477
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 477
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 488 SGALNLSAAAMVACVDKSSILASP 417
           SG  +   AA+ A V  SSI++SP
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -3

Query: 195 WCTCIFQFWNVVIRVTVR*CSLFFALLGHR 106
           + TC+   W  +  + +   +LF+ L+  R
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -3

Query: 195 WCTCIFQFWNVVIRVTVR*CSLFFALLGHR 106
           + TC+   W  +  + +   +LF+ L+  R
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYLLVSLR 184


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 512 ASLPVAVVSGALNLSAAAMVACVDKSSI 429
           A +PV V+   + LSA+AMV  +   S+
Sbjct: 177 AQIPVDVLVLTVTLSASAMVLGLSSYSL 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,136
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)