Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5f10
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 153 1e-37
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 32 0.43
10_01_0269 - 2865731-2865752,2866627-2868605 30 1.7
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 29 2.3
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 4.0
02_03_0085 + 15063444-15063889,15064324-15065311 29 4.0
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 5.2
05_01_0240 - 1791138-1791470 28 6.9
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 28 6.9
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 27 9.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 9.2
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 27 9.2
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 153 bits (371), Expect = 1e-37
Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Frame = +3
Query: 54 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 233
E + ++ VQ +GLAV+KI+KHC E + + + G LLGL V + LE+TNCFPFP +D
Sbjct: 27 EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83
Query: 234 T----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESV 401
D YQL+MMR LR VNVD+ VGWYQS +G+F ++ L+E+ +YQ +I V
Sbjct: 84 DEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCV 143
Query: 402 VVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNS 581
++YD +S +G L LKA +LT + +Y+ T E LR K+ + ++F E+PI + NS
Sbjct: 144 CIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPIKVSNS 203
Query: 582 PL 587
L
Sbjct: 204 AL 205
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 66 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 245
T++ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72
Query: 246 EEYQLD 263
+ LD
Sbjct: 73 RIWFLD 78
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 330 HLHSGTIQHENDQH*LFEASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEP 151
HL SGTIQ E+ ++ + +SS P H H++ + + G R EP
Sbjct: 294 HLASGTIQ-EHSRYSVGSSSSKNSAAAPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEP 352
Query: 150 P 148
P
Sbjct: 353 P 353
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 195 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 55
P G P QG + PPP + +S F SLP+H+ + G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 306 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 461
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -3
Query: 276 ASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 97
+SS PT P H W R G P S G E C +I+ +V+L +L
Sbjct: 31 SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84
Query: 96 PVHRTEHIGSSLHFQ 52
P HR H G+++ Q
Sbjct: 85 PSHRIAHHGTAIEQQ 99
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 146 GGGSGSSPWFGR*EPSGDYQLLP 214
GGG GS WF R SG LLP
Sbjct: 47 GGGGGSGGWFSRLVASGASLLLP 69
>05_01_0240 - 1791138-1791470
Length = 110
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Frame = +1
Query: 124 MKNHA-ATWRW-----LRELSLVWSLRTVWRL 201
M+ HA WRW LR L W R VWRL
Sbjct: 24 MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 124 MKNHAATWRWLRELSLVWSLRTVWRLPTASHFQSMTTPWMRRNTS 258
M N + TWR +++ V +WR+ S PW+ R S
Sbjct: 9 MSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWS 53
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 159 PEPPPCCCMILHDSVSLFSSLPVHRT 82
P P C ++ HD S S LP RT
Sbjct: 99 PSHPDCKLVVSHDDYSFMSKLPSERT 124
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 269 EEASKSQC*SFSCWMVPECRCRQFSKPFVIRVTISLSDLY*GECCCDLRYKEISQRILDF 448
+E S++ SF C + E + +T +L + G C +L + I+ R++
Sbjct: 1892 KEMSRNVSESFYCLVCSEADALSDEHKSLASITYNLIE---GNKCGNLLVELIASRLILD 1948
Query: 449 EGLSFDTSGYCYVQGRRLHSG 511
L + SGYC+ H G
Sbjct: 1949 VHLQAEASGYCFESEPGSHDG 1969
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 159 PEPPPCCCMILHDSVSLFSSLPVHRTEHIG----SSLHFQE 49
P+PPP M H +SLFS R+ +G ++ HFQE
Sbjct: 168 PQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQE 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,880
Number of Sequences: 37544
Number of extensions: 401270
Number of successful extensions: 1093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -