Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5f10
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 126 1e-29
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 30 1.2
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 2.7
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 2.7
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 2.7
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 4.7
Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical ... 28 6.2
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 8.2
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.2
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.2
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.2
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.2
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 126 bits (304), Expect = 1e-29
Identities = 72/193 (37%), Positives = 118/193 (61%), Gaps = 19/193 (9%)
Frame = +3
Query: 66 TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 224
+++++ D L VMKIVKH E + + + G L GLV ++RLEITNCFP +
Sbjct: 11 SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70
Query: 225 HDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQ 368
++ MD++ +Y+ LDM+R+ R +N+D+ VG+YQS G S L+ES
Sbjct: 71 NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESM 130
Query: 369 YHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENL 548
+ YQ E+VV+IYD K+ +G L+L+A+RL+ A+ + + D+ PE ++ + Y+N+
Sbjct: 131 FDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTYQNM 190
Query: 549 FIEVPIVIRNSPL 587
F E+PI+I++S L
Sbjct: 191 FEELPIIIKSSYL 203
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +3
Query: 138 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 308
+ E G L+G + +++TNCF P +DD ++++ M+ L++ + + V
Sbjct: 32 TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91
Query: 309 GWYQSADVGNFLSLSLLESQYHYQTSIEES 398
GW+ + + S L+ Y+ + E S
Sbjct: 92 GWFLT--TSDITSSCLIYHDYYVRVITEAS 119
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 381 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLFI 554
T+I ES I+ T+ S LTL + + TP A IA E + TP+ ++ + ++
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQER-- 532
Query: 555 EVPIVIRNSPLTXHN 599
E+P+ + ++ + N
Sbjct: 533 ELPVSMMSTTVNVEN 547
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Frame = +3
Query: 81 QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 218
QCD AV+K +K EE CS N+E +A+ G +V ++ +++TNC F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575
>Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 266 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 96
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +3
Query: 54 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 233
EN+ + Y+Q D ++K+ + S N+ + L L + R EI C H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172
Query: 234 TMDEEEY 254
+++
Sbjct: 173 MTKSQQF 179
>AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 266 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 96
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
protein C16C10.3 protein.
Length = 1032
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 522 NLKIGYENLFIEVPIVIRNSPLTXHND 602
NLK G N F+E+P +R + +N+
Sbjct: 707 NLKCGGTNFFVEIPNAVRGKAVCSNNE 733
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 48 APENEATIQYVQCD 89
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,588
Number of Sequences: 27780
Number of extensions: 331723
Number of successful extensions: 828
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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