Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f09
         (377 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    79   3e-14
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ...    33   1.8  
UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculu...    32   4.1  
UniRef50_Q0IBD7 Cluster: Phosphatidate cytidylyltransferase; n=2...    31   9.4  
UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1; ...    31   9.4  
UniRef50_A4XRA4 Cluster: Drug resistance transporter, Bcr/CflA s...    31   9.4  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 79.0 bits (186), Expect = 3e-14
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +3

Query: 48  MGFFTALIVNIVGGAVLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXXYYGNLMAGSI 224
           MG   AL VN+VGGA++   GG L PIVAP+LGF                YYGN++AGS+
Sbjct: 1   MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60

Query: 225 ISKLTAAAMIAPTP 266
           IS+LT+AAM+APTP
Sbjct: 61  ISQLTSAAMLAPTP 74


>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 887

 Score = 33.1 bits (72), Expect = 1.8
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 142 PSRGATIGIKNP-PMQRTAPPTMLTIRAV-KNPMILKSQ*LLT 20
           PS GA    ++P P    AP    T+R V KNP +LKS  LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781


>UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculum
            reducens MI-1|Rep: YD repeat protein - Desulfotomaculum
            reducens MI-1
          Length = 2558

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 45   IMGFFTALIVNIVGGAVLCMGGFLIPIVAPLLG 143
            + G  TAL V ++GGA +  G +  P+VA L G
Sbjct: 2255 LYGGLTALAVGLIGGAAVGTGDYASPVVAALAG 2287


>UniRef50_Q0IBD7 Cluster: Phosphatidate cytidylyltransferase; n=20;
           Cyanobacteria|Rep: Phosphatidate cytidylyltransferase -
           Synechococcus sp. (strain CC9311)
          Length = 306

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 190 WAEAAMLPAIIPDALKPSRGATI 122
           WA +  LPA++PDA+ P  GA I
Sbjct: 87  WANSGGLPALLPDAVLPLSGAAI 109


>UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 108

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
 Frame = +3

Query: 3   ICIVYLVRSYCDLRIMGFFTALIVN-------IVGGAVLCMGGFLIPIVAPLLG 143
           IC++Y++ S+  +  +G  TAL  N       I G A++ +  F+I I++ +LG
Sbjct: 19  ICMIYIIYSWMSITNVGVVTALTHNNGDAMLLIFGAAIVLIVFFIIDIISLILG 72


>UniRef50_A4XRA4 Cluster: Drug resistance transporter, Bcr/CflA
           subfamily precursor; n=1; Pseudomonas mendocina ymp|Rep:
           Drug resistance transporter, Bcr/CflA subfamily
           precursor - Pseudomonas mendocina ymp
          Length = 399

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 39  LRIMGFFTALIVN-IVGGAVLCMGGFLIPIVAPLL 140
           L ++G FTA++++ ++GG +   GG+  P+VA L+
Sbjct: 133 LTVLGMFTAIVLSPLLGGLLTQYGGWRAPLVASLV 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,339,729
Number of Sequences: 1657284
Number of extensions: 7823279
Number of successful extensions: 17238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17229
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)