Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5f06
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.19
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 32 0.19
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 32 0.19
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 2.3
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 2.3
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 27 7.0
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 27 7.0
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 27 7.0
AF003137-1|AAB93642.1| 294|Caenorhabditis elegans Hypothetical ... 27 7.0
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 27 9.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 27 9.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 27 9.3
AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical ... 27 9.3
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.3 bits (70), Expect = 0.19
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -2
Query: 426 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 247
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 118 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 174
Query: 246 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 148
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 175 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 207
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.3 bits (70), Expect = 0.19
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -2
Query: 426 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 247
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381
Query: 246 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 148
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.3 bits (70), Expect = 0.19
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -2
Query: 426 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 247
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381
Query: 246 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 148
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 262 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 137
R LG HP G VW+ + + HW + + I C
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 262 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 137
R LG HP G VW+ + + HW + + I C
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
ZK1067.1 protein.
Length = 1323
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 60 TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 155
T ++H+ LK N Q + D +++ +RCW
Sbjct: 1093 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1124
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 60 TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 155
T ++H+ LK N Q + D +++ +RCW
Sbjct: 1093 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1124
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 60 TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 155
T ++H+ LK N Q + D +++ +RCW
Sbjct: 1144 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1175
>AF003137-1|AAB93642.1| 294|Caenorhabditis elegans Hypothetical
protein C27A12.4 protein.
Length = 294
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 239 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKS 358
TDP H+ GDL SKTAE+ V+P + + KS
Sbjct: 4 TDPSQLYNHHSVTNGDLCT----SKTAEMEVLPPIGRDKS 39
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 236 ETDPGPKNPHNCD-VKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKAD 394
ET K P + VK + N KTA VP+ KK S E +K++
Sbjct: 41 ETKTLDKRPQTAELVKDEKNSNSEEKKTASANEVPAQKKLNSKEEVKKEKKKSE 94
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 338 SVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAVC 457
S + S S P+K + EK +R T G + LA+C
Sbjct: 779 SAQNSSSTPKKNAKKEKKKQKREARQTPLGNNKFSALAMC 818
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 29 STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIRSS 133
+T +K T+ HPHR PP+ + ++ + +SS
Sbjct: 688 NTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSS 722
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 29 STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIRSS 133
+T +K T+ HPHR PP+ + ++ + +SS
Sbjct: 910 NTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSS 944
>AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical
protein T21H3.5 protein.
Length = 383
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 3 TLLRECLQHRLLVLSSPHLTRTVHSHLKW 89
TLL LQ+ L+ +S PH T+ S LKW
Sbjct: 248 TLLSIALQN-LISISIPHFVLTITSLLKW 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,940
Number of Sequences: 27780
Number of extensions: 262174
Number of successful extensions: 702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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