Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5f02
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    37   0.006
AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical ...    36   0.011
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   5.0  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    27   6.7  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    26   8.8  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 123 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 296
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD+    +E+    KG
Sbjct: 8   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKG 67

Query: 297 LFQSC 311
              +C
Sbjct: 68  YMHTC 72


>AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical
           protein Y111B2A.2 protein.
          Length = 86

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 123 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 296
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD     +E+    KG
Sbjct: 4   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKG 63

Query: 297 LFQSC 311
              +C
Sbjct: 64  YMHTC 68


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 290 EGSIPILLNMNYHSVVLLLFCCE*CYNLNKKLEGEK 397
           + S P+     Y S+ +L FCC     ++K L+G +
Sbjct: 743 QNSCPLGFQCTYSSIRMLYFCCRDIVRIDKCLQGSR 778


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -2

Query: 395 FLLQVFYLNYNIIH----SKTIIILHYDSSYLAGLE*TLLAHLLKFLFSIIGSVEFSILS 228
           FL  V YL Y  +H    S  ++ +H  +S    +      +L+ F+F  +GS+ +S + 
Sbjct: 104 FLTWVVYLAYMFLHLQFVSAVVLSVHRITSVYLHMNNDKYWNLI-FIFFCLGSILYSCIC 162

Query: 227 LALITNELLE 198
            +LI   ++E
Sbjct: 163 NSLIPGHIVE 172


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 398 FFLLQVFYLNYNIIHSKTIIILHYDSSYLAGLE*TLLAHLLKFLFSI 258
           F  L  F + +N I S  III ++   ++ GL+    A +  FLF +
Sbjct: 158 FVSLSPFLIIWNTIISPKIIIYYFGGFFMLGLKAVEWADISLFLFLV 204


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 308 GLE*TLLAHLLKFLFSIIGSVEFSIL-SLALITNELLEGKTSDARESQSNNN 156
           G++ TL+A+   FL    G +E  +  S++LI+ +LLEG        + NNN
Sbjct: 84  GMKQTLVANR-DFLILAAGHLENLLRNSISLISIDLLEGADFSENSDRDNNN 134


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 KQLIGNERKRKYAEFYRTYDAEKEFEE 281
           ++L+  E++RKY E      A +E+EE
Sbjct: 677 ERLLEEEKRRKYLELQNEIKAAREYEE 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,750,962
Number of Sequences: 27780
Number of extensions: 132704
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)