Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e22
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.2  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   7.3  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   9.6  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -3

Query: 247 LSLESDDRICYEVRMYPVPNFERIGKQIFRLPIHQIFRCNLTLYSNFQ--HRKLYS 86
           L  ++   +C  +  +   N + + K +  +PIH I +   T   N    H KL S
Sbjct: 728 LDFDNSAELCSSLTRFTPKNIDFVLKSLIHIPIHSITKNQRTRLLNLLIIHEKLLS 783


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
 Frame = +1

Query: 334 FMTIVEAKWRWTLFYLFLAFCAD------WLFFGIIYWFIALVHGDLSEDHLPQYQNATG 495
           F T +   + W+L   F+  C        W  F  ++     VH + +    PQY N T 
Sbjct: 217 FETGIPQSFAWSLIAPFIVGCPAENEKLVWQNFPALHLVSPPVHTNFTNGSFPQYPNGTY 276

Query: 496 WVP 504
             P
Sbjct: 277 MYP 279


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 133 CNLTLYSNFQHRKLYSKSISHYLTNN 56
           C L  ++N   ++L+SKSI+H    N
Sbjct: 11  CGLHSFTNSSAQQLFSKSIAHSSRRN 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,417
Number of Sequences: 5004
Number of extensions: 47668
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)