Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e22
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifyi...    78   5e-15
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    62   3e-10
Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    27   8.8  

>U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 2 protein.
          Length = 514

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
 Frame = +1

Query: 259 RVLSKDGESNFSKPLL--HCRKGFSYSFMTIVEAKWRWTLFYLFLAFCADWLFFGIIYWF 432
           R++ K G  N S   +    RK FS  F T++E KWRW L Y  L+F   W FF  +Y+ 
Sbjct: 82  RLVQKQGLCNISLKNVPKQRRKYFSDIFTTVIEMKWRWCLLYFSLSFMISWSFFATVYFL 141

Query: 433 IALVHGDLSEDHLPQYQNATGWVPCIKNVYGFTSTFLF 546
           IA  HGD+      Q  NAT W PCI NV+   + FLF
Sbjct: 142 IAKQHGDIE-----QIANAT-WTPCIVNVHNELNAFLF 173


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 32/71 (45%), Positives = 39/71 (54%)
 Frame = +1

Query: 334 FMTIVEAKWRWTLFYLFLAFCADWLFFGIIYWFIALVHGDLSEDHLPQYQNATGWVPCIK 513
           F T+++ KWRW L     AF   W  FG  Y+ IALVHGDLS   LP   N T    C+ 
Sbjct: 102 FTTMIDVKWRWMLMLFASAFVLSWSIFGTTYYLIALVHGDLS---LPTPVNHTA---CVM 155

Query: 514 NVYGFTSTFLF 546
           N+    S+FLF
Sbjct: 156 NLDSVYSSFLF 166


>Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical
           protein K04G11.5 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +1

Query: 259 RVLSKDGESNFSKPLLHCRKGFSYS-------FMTIVEAKWRWTLFYLFLAFCADWLFFG 417
           R++SKDG++  +   +  R   +Y        F  I+E  WR       L F   W  F 
Sbjct: 38  RLVSKDGKTLLNNIQIPERFRQAYKWRYCRNWFHLIIECNWRTICILFLLGFIVSWTIFA 97

Query: 418 IIYWFIA 438
           +IY+ I+
Sbjct: 98  VIYYVIS 104


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 469 LPQYQNATGWVP 504
           L QYQN TGW+P
Sbjct: 386 LKQYQNQTGWIP 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,321,650
Number of Sequences: 27780
Number of extensions: 261904
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)