Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e22
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 265 KLFCFLLSLESDDRICYEVRMY 200
           K+F FL S++  +   YE+ +Y
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLY 640


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 265 KLFCFLLSLESDDRICYEVRMY 200
           K+F FL S++  +   YE+ +Y
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLY 640


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 181 RIGKQIFRLPIHQIFRCNLTLYSNFQHRKLY 89
           +I  ++  LP+    + N+T+Y    H  +Y
Sbjct: 132 KIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 184 ERIGKQIFRLPIHQIFRCNLTLYSN 110
           E  G ++ R+P ++++R +  LY+N
Sbjct: 73  EFAGIRVIRVPYNRVWRPDTILYNN 97


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 118 IMSDYNEKSDEWEDGK 165
           IM DY ++ DE+ D K
Sbjct: 258 IMVDYEDEFDEFGDSK 273


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 151 WEDGKFVFQFVQ 186
           WE GK +F+F++
Sbjct: 325 WETGKNLFEFIR 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,058
Number of Sequences: 438
Number of extensions: 3142
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)