Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e20
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   1.2  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   1.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   2.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   2.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   2.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   2.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   2.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   2.8  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.7  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   4.9  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    24   6.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   8.6  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     24   8.6  

>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 362 LEICMYRLLIWLERISFLLKLIHLNDNTPYSDL---RVVPS*NLSIDHMKSK 216
           +E+C  +  IW++ ++FL   +H+  N  ++     R     N S  H+ SK
Sbjct: 90  IELCNQKFEIWVDGLTFLGCPVHIGPNGEWAKRRKPRTTVESNASSSHLVSK 141


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 143 TYDGAVAEFSTEDCASLGFIKANLLCSSC 229
           TYD ++A+    D ++L   KAN LC+ C
Sbjct: 405 TYDSSLAD-DHSDTSNLSKDKANTLCAQC 432


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 158 VAEFSTEDCA-SLGFIKANLL-CSSCDQLKDFSLEQLVDHCKECCHSD 295
           V  +S + C  S+G++K  L  C +C +    SL  +   C   CH+D
Sbjct: 27  VLPYSFDTCTYSMGYLKQPLYACLTCQKASG-SLNAVCYSCSISCHAD 73


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 100 YLNAYFLALSTNLIIFKQIFDFXEPFNIMTF 8
           Y   YF  LS+ +I     F+F E FN  TF
Sbjct: 616 YSQFYFCILSSAIIKMYLDFEFNENFNATTF 646


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 218 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 313
           C +C     F ++E++V H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 218 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 313
           C +C     F ++E++V H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 176 EDCASLGFIKANLLCSSCDQLK 241
           EDC  LG I+ ++ C SC + K
Sbjct: 494 EDCVLLGEIRCHIGCLSCTKCK 515


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 70  SKVRGNKRLGSKNVLEVF 123
           + VRGNKR+ SKN  E F
Sbjct: 144 NNVRGNKRIDSKNAEEGF 161


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 50  FENY*VRRKCEEISV*VVKMYWKCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLL 217
           F+ Y +   C +     V+MY   F+   +   +G ++ FS+    +LG++K   L
Sbjct: 269 FKKYQILEACRD-----VRMYLYFFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKAL 319


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 QLKDFSLEQLVDHCKECCHSDESASKEKKYAR 328
           Q+ D ++EQL  H K      E A+KE+K  R
Sbjct: 51  QITDEAIEQLKAHVKITAPEFEIAAKEEKRQR 82


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 222 EQSRLALIKPREAQSSVENSAT 157
           + + LA  + REAQSS+E SA+
Sbjct: 152 QDAELASERAREAQSSIERSAS 173


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 122 NTSNTFLLPKRLFPRTFDEL 63
           NTS+  L P+ L PRT D +
Sbjct: 312 NTSSKILKPRTLTPRTVDPI 331


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 167  FSTEDCASLGFIKANLL 217
            F  E C+SL F K NLL
Sbjct: 1833 FPLEHCSSLNFAKENLL 1849


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 344 RLLIWLERISFLLKLIHLNDNTPYSDLRVV 255
           +++I L  +SFLL L H+     +  L V+
Sbjct: 47  KIIITLVELSFLLSLFHIISGVNHESLFVI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,145
Number of Sequences: 5004
Number of extensions: 21834
Number of successful extensions: 75
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)