Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e20
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    50   6e-07
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398...    29   0.86 
05_01_0328 - 2571155-2571627,2571894-2572197                           29   1.1  
07_01_0565 + 4188387-4190570                                           27   4.6  
02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165     27   4.6  
02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071     27   4.6  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     27   6.1  
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824     26   8.1  

>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
 Frame = +2

Query: 167 FSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LVDHCKECC--HSDESASKEKKYARAIL 337
           F   +C  LGF     LCS C+ L +F  +Q LV+ C++CC   SD+S SK   ++ AI+
Sbjct: 28  FGARECEELGFTGL-ALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISK-LTFSGAII 85

Query: 338 EVCTCKFPAY 367
           EVC  K   Y
Sbjct: 86  EVCMRKLVFY 95


>08_01_0451 +
           3979323-3979566,3979649-3980012,3980112-3980330,
           3980713-3980872,3981680-3981817,3982161-3982448
          Length = 470

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 74  KCEEISV*VVKMYWKCFVLAVLVTYDGAVAEFSTEDCASLGFIK 205
           KC E ++  +  Y KCF L +L T+D    E  T +   + ++K
Sbjct: 276 KCNESAIVRLPEYMKCFYLYLLKTFDLIEEELGTSNSYRVFYLK 319


>05_01_0328 - 2571155-2571627,2571894-2572197
          Length = 258

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +2

Query: 239 KDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCK 355
           K + +  + DHC++    D++ +K+++Y+ A +    C+
Sbjct: 133 KLYQIVVICDHCEDSFRQDKAVNKQRRYSEARITEIDCE 171


>07_01_0565 + 4188387-4190570
          Length = 727

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 275 KECCHSDESASKEKKYARAILEVCTCKFP 361
           K+C  + E+   E KY   ILE C  K P
Sbjct: 604 KDCLGNVENGPMEFKYTLTILEACQSKSP 632


>02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165
          Length = 160

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 161 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 331
           A    + C    FIK   +  +   +KD   ++ +D C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


>02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071
          Length = 136

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 161 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 331
           A    + C    FIK   +  +   +KD   ++ +D C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 212 LLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKK 319
           L C +C  +KD    +L +  KE    D++  +EKK
Sbjct: 64  LRCKACGVIKDIEFGKLAEAKKEEKKPDQAKKEEKK 99


>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
          Length = 613

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 107 MYWKCFVLAVLVTYDGAVAEFSTEDCASLGFIKAN 211
           + W CF L VL + D  +  +S  D  S G I  N
Sbjct: 84  LVWSCFFLFVLASSD-TITAYSLADVKSPGIILLN 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,016
Number of Sequences: 37544
Number of extensions: 115541
Number of successful extensions: 342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)