Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e20
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    64   2e-11
AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormo...    29   1.4  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    28   2.4  
U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    27   4.2  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    26   9.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 113 WKCFVL--AVLVTYDGAVAEFS--TEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKE 280
           W  F+L  AV+    G V E+    E+C + GF    L C  C++L D+ LE L+  C +
Sbjct: 2   WVIFLLLAAVVSPMFGEVEEYKIDVEECKAAGFNPETLKCGLCERLSDYHLETLLTDCLQ 61

Query: 281 CCHSDESASKEKKYARAILEVCTCKFPAY 367
           CC  +E   K +KY  AILEVC C    +
Sbjct: 62  CCIKEEE-FKHEKYPTAILEVCECNLARF 89


>AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 155 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 180 SSVENSATAPSYVTSTAKTKHFQYIFTT*TLISSHFRRT**FSNKFL 40
           S V  S + P  V ST++   + +  TT    +S FRRT  F  +FL
Sbjct: 50  SKVSESFSKPCQVCSTSERTSYHFGTTTCMACASFFRRTVAFGIRFL 96


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +2

Query: 227 CDQLKDFSLEQLVDHCKEC-----CHSDESASKEKKYARAILEVCTC 352
           CD LKD S     ++CKEC     C +      EKK   ++L    C
Sbjct: 144 CDGLKDCSDGSDEENCKECQSIYSCRAHIEEESEKKDKTSVLPTLIC 190


>U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical
           protein F19C7.1 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 122 FVLAVLVTYDGAVAEFSTEDCASLGFIKAN 211
           F +     Y  AVA+F T++C S  F   N
Sbjct: 3   FAIVFAALYGAAVAQFGTDNCVSAQFQACN 32


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 122 FVLAVLVTYDGAVAEFSTED-CASLGFIKANLLCSSCDQLKDFSLEQ 259
           FVLA   TY    A F     C  +GF    L+ +S  QLKD  + +
Sbjct: 187 FVLASDYTYQLIAAVFIISQLCFEIGFFVTYLVWNSYKQLKDMKISK 233


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 215 LCSSCDQLKDFSLEQLVDHC-KECCHSDESAS 307
           +C   D  +    + LVDHC K+ CH++ + +
Sbjct: 125 MCECADGYEGVHCQHLVDHCAKQPCHNNATCT 156


>U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical
           protein C56E10.1 protein.
          Length = 547

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 227 CDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVC 346
           C+  K FS+  L DH +E         +++KY++A+++ C
Sbjct: 457 CNASKYFSISGLSDHAREVV-----TREKEKYSKALMKYC 491


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 218 CSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCKFPAY 367
           CS C  L   S +  V  CK  CH+   + K++++   +      K P Y
Sbjct: 9   CSHCFSLNCISTDCPVSKCKH-CHTLLHSCKQEEHIEHVCRRAPVKCPNY 57


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 221  SSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEV 343
            SS    +DF  EQ V  C++C H  +    EK+YA  +  V
Sbjct: 1772 SSESDFEDFVREQEV--CRKCKHQVKRDKMEKQYANWLRNV 1810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,963,614
Number of Sequences: 27780
Number of extensions: 119036
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)