Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e20
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.38 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   0.87 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 124 ETLPIHFYYLNAYFLALSTNLIIFKQIFDFXEPF 23
           E L  H   LN Y+L   +N + + + FD+ +PF
Sbjct: 258 EYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPF 291


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 335 IWLERISFLLKLIHL 291
           +WL++I  LL++IHL
Sbjct: 5   MWLQQIFILLQMIHL 19


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 124 ETLPIHFYYLNAYFLALSTNLIIFKQIFDFXEPF 23
           E L  H   LN Y+L   +N +   + FD+ +PF
Sbjct: 258 EYLYSHKLLLNRYYLERLSNDLPHLEEFDWQKPF 291


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 CSSCDQLKDFSLEQLVDHCKECCHSD 295
           C  CD++++    Q +  C+   HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 AVLVTYDGAVAEFSTEDCASLGFIK 205
           AV+  +DG V   +   C +LG++K
Sbjct: 166 AVISMHDGLVLYTTPSICTALGYLK 190


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 AVLVTYDGAVAEFSTEDCASLGFIK 205
           AV+  +DG V   +   C +LG++K
Sbjct: 161 AVISMHDGLVLYTTPSICTALGYLK 185


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 167 TLPQLHHMSLARLKRN 120
           T+P+  H+ +ARL RN
Sbjct: 377 TIPKEKHVEVARLIRN 392


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 QLKDFSLEQLVDHCKECCHSDESASKEK 316
           +L+D  +   +++  E C  DE+ + EK
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEK 535


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 167 TLPQLHHMSLARLKRN 120
           T+P+  H+ +ARL RN
Sbjct: 377 TIPKEKHVEVARLIRN 392


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 322 RSSHIRSLYMQ 354
           R SH+R LY+Q
Sbjct: 864 RLSHLRELYLQ 874


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 203 KANLLCSSCDQLKDFSLEQLVDHC 274
           K+NL C  C   +    E  +++C
Sbjct: 145 KSNLKCDKCSTYQSNGEEVCLENC 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,666
Number of Sequences: 438
Number of extensions: 1478
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)